Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

44567021 .. 44569143

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTCGAACCACGAAGACGAGGACTACATGTTATGGGTGGTGGAATGGCGAGGAAATTGCCGAAAAACCTGAAATCGCGGGAGCCCCAAAAGCCACCGCGGTCACCGCCTTGCTGCACCTCCTACGACCCAAATCGCGCCATCAAAATACCACGGACATAAAGAGGAGGAAGAGAGGGTTCCATAGCCGCCCGCCTTGTCCAAATCTGTGGCCGAATGAGGAAGAAACGGCCGGCCAAAGCCGACGGGGTCGGGGAGAGAGAAACGAAGAGGAGAGAGGAGAGAGAGAGAGTGATAATGGTGGAATCAAAGGTCGTCTCAACACCAACAAAGAAGACTTCAAAGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

9.85

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	80, 101, 139
AciI	CCGC	6 cut(s)	80, 99, 101, 108, 190, 194
AcoI	YGGCCR	3 cut(s)	212, 231, 235
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	212, 231, 235
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	2 cut(s)	23, 342
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BcoDI	GTCTC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	116, 190
BlsI	GCNGC	2 cut(s)	117, 191
BmiI	GGNNCC	2 cut(s)	85, 182
BpiI	GAAGAC	2 cut(s)	23, 342
BsaJI	CCNNGG	2 cut(s)	99, 153
Bse118I	RCCGGY	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	99, 153
BseRI	GAGGAG	3 cut(s)	181, 287, 294
BseX3I	CGGCCG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	3 cut(s)	80, 101, 139
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	214, 233, 237
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsnI	GGCC	3 cut(s)	214, 233, 237
Bsp1286I	GDGCHC	1 cut(s)	88
BspACI	CCGC	6 cut(s)	80, 99, 101, 108, 190, 194
BspANI	GGCC	3 cut(s)	214, 233, 237
BspFNI	CGCG	3 cut(s)	80, 101, 139
BspLI	GGNNCC	2 cut(s)	85, 182
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	99, 153
Bst6I	CTCTTC	2 cut(s)	167, 264
BstC8I	GCNNGC	2 cut(s)	194, 235
BstDSI	CCRYGG	2 cut(s)	99, 153
BstEII	GGTNACC	1 cut(s)	103
BstFNI	CGCG	3 cut(s)	80, 101, 139
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	323
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 107
BstNSI	RCATGY	1 cut(s)	33
BstPI	GGTNACC	1 cut(s)	103
BstUI	CGCG	3 cut(s)	80, 101, 139
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	2 cut(s)	23, 342
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	214, 233, 237
BtgI	CCRYGG	2 cut(s)	99, 153
Cac8I	GCNNGC	2 cut(s)	194, 235
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	102
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	7 cut(s)	86, 95, 189, 214, 233, 237, 243
CviKI_1	RGCY	7 cut(s)	86, 95, 189, 214, 233, 237, 243
EaeI	YGGCCR	3 cut(s)	212, 231, 235
EagI	CGGCCG	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	167, 264
EarI	CTCTTC	2 cut(s)	167, 264
EclXI	CGGCCG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	1 cut(s)	33
FaiI	YATR	5 cut(s)	31, 36, 161, 186, 352
FatI	CATG	1 cut(s)	29
FauI	CCCGC	2 cut(s)	73, 201
Fnu4HI	GCNGC	2 cut(s)	116, 190
FriOI	GRGCYC	1 cut(s)	88
FseI	GGCCGGCC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	116, 190
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	116, 190
HaeIII	GGCC	3 cut(s)	214, 233, 237
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	118, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 107
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	2 cut(s)	84, 247
Lsp1109I	GCAGC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	103
MboII	GAAGA	5 cut(s)	28, 184, 236, 281, 347
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	9 cut(s)	15, 46, 131, 159, 162, 170, 214, 265, 272
MroNI	GCCGGC	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	3 cut(s)	80, 101, 139
MwoI	GCNNNNNNNGC	2 cut(s)	92, 107
NaeI	GCCGGC	1 cut(s)	235
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	85, 182
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	33
PciI	ACATGT	1 cut(s)	29
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	306
PflFI	GACNNNGTC	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	117, 191
PscI	ACATGT	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	85, 182
PsyI	GACNNNGTC	1 cut(s)	249
RigI	GGCCGGCC	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	102
SatI	GCNGC	2 cut(s)	116, 190
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	73, 123, 316
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	6 cut(s)	80, 99, 101, 108, 190, 194
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	249
XceI	RCATGY	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.