Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

57706838 .. 57710558

Gene Structure 3721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAAACATATATACCTAATGAAATTAGCCAATTACAGCTCCTAGTCTTGGATCTTAGCAACAACAACATCTTTAGTGATATTCCAGACCAGATATCTTACCTAAAGCATGTGGAGGTATTAGATCTCTCCATGAATCATTTGTCTGGAGAGATCCCCACTTCATTTACTGAAGACATCAAAGTGAGAAAAGAACCGTGCAAGGCGCTAGGAGGCCGAGAAGCTGCACAGCTCGAGCTGGAATTCGCCCGATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCTGACCTCTAATCGAGTTGATTCCAAAAGGTATTTTTCTGGGCTTGAGCTATACTACAATGTTGTAGAAGACATCGAGGGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

4.88

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	60, 148
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	40, 224, 232, 238, 337
AluI	AGCT	5 cut(s)	40, 224, 232, 238, 337
AlwI	GGATC	2 cut(s)	60, 148
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	214, 271
ApeKI	GCWGC	2 cut(s)	224, 255
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	180, 363
BbvI	GCAGC	2 cut(s)	211, 242
BfaI	CTAG	2 cut(s)	44, 209
BfoI	RGCGCY	1 cut(s)	209
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	225, 256
BlsI	GCNGC	2 cut(s)	226, 257
BmeT110I	CYCGRG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	180, 363
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseX3I	CGGCCG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	211, 242
BsgI	GTGCAG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	216, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	2 cut(s)	216, 273
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	52, 124, 153
BspANI	GGCC	2 cut(s)	216, 273
BspPI	GGATC	2 cut(s)	60, 148
BspQI	GCTCTTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssMI	GATC	3 cut(s)	52, 124, 153
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	3 cut(s)	55, 127, 156
BstMBI	GATC	3 cut(s)	52, 124, 153
BstMCI	CGRYCG	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	211, 242
BstV2I	GAAGAC	2 cut(s)	180, 363
BstX2I	RGATCY	3 cut(s)	52, 124, 153
BstYI	RGATCY	3 cut(s)	52, 124, 153
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	216, 273
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	269
CviAII	CATG	2 cut(s)	110, 133
CviJI	RGCY	9 cut(s)	30, 40, 216, 224, 232, 238, 273, 331, 337
CviKI_1	RGCY	9 cut(s)	30, 40, 216, 224, 232, 238, 273, 331, 337
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	3 cut(s)	54, 126, 155
DpnII	GATC	3 cut(s)	52, 124, 153
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
EclXI	CGGCCG	1 cut(s)	271
Eco32I	GATATC	2 cut(s)	96, 278
Eco52I	CGGCCG	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	242
EcoRV	GATATC	2 cut(s)	96, 278
FaeI	CATG	2 cut(s)	113, 136
FaiI	YATR	6 cut(s)	10, 12, 14, 111, 134, 340
FatI	CATG	2 cut(s)	109, 132
Fnu4HI	GCNGC	2 cut(s)	225, 256
Fsp4HI	GCNGC	2 cut(s)	225, 256
FspBI	CTAG	2 cut(s)	44, 209
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	225, 256
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	2 cut(s)	216, 273
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	113, 136
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	136, 308
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	86, 147
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	201, 227
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	113, 136
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	52, 124, 153
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	99, 104, 132, 224, 283, 312
Lsp1109I	GCAGC	2 cut(s)	211, 242
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	44, 209
MalI	GATC	3 cut(s)	54, 126, 155
MboI	GATC	3 cut(s)	52, 124, 153
MboII	GAAGA	3 cut(s)	185, 252, 368
MflI	RGATCY	3 cut(s)	52, 124, 153
MluCI	AATT	3 cut(s)	24, 32, 242
MnlI	CCTC	4 cut(s)	109, 206, 304, 358
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	270
NdeII	GATC	3 cut(s)	52, 124, 153
NlaIII	CATG	2 cut(s)	113, 136
NmeAIII	GCCGAG	1 cut(s)	242
NspI	RCATGY	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	136, 308
PkrI	GCNGC	2 cut(s)	226, 257
PspXI	VCTCGAGB	1 cut(s)	233
PsuI	RGATCY	3 cut(s)	52, 124, 153
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	265
SatI	GCNGC	2 cut(s)	225, 256
Sau3AI	GATC	3 cut(s)	52, 124, 153
SfaNI	GCATC	1 cut(s)	242
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	233, 332
SmoI	CTYRAG	2 cut(s)	233, 332
Sse9I	AATT	3 cut(s)	24, 32, 242
SspMI	CTAG	2 cut(s)	44, 209
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	234, 301, 363
TasI	AATT	3 cut(s)	24, 32, 242
TfiI	GAWTC	2 cut(s)	136, 308
TseI	GCWGC	2 cut(s)	224, 255
TspDTI	ATGAA	3 cut(s)	36, 149, 153
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	2 cut(s)	44, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.