Rroxscaffold_5G00344550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004553
Physical Location & Seq
Reverse (-)
14680871 .. 14691557
10687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344550.1

Sequence Viewer

Length: 765 bp
ATGACGTTGCGGATTTTGAAGGTCAACATCTGCAGCGACAAGGATCGGGACAGGTTCGTGGCGACGCGGGTTGCAGCGGCGTGGTTCTTGGTGATTGGGGTCATAGCAGCGAGGATCATGCCGGCGGAGTGGGTCCGCGGAGGTTTGCAGAGCGGTGCTGATGCCGATGCTGCTACCTTGGTTTGGGTTGTTGGAAAGAGAAGTTGGGCCTGGGCCAAACCGGTCCCGATGGGCTTTGAGCGATCACACTCATTTCCTTCCTACGGAAACCTTGTCATCAACATGACATCAAGCTCGGAGGAAGTAGATGCTTTCTCCCAAGGTGGCTTGCAACGATTCAAAGTGTGGAGGTCGAATTTTGAAGATTGTGATTCTAGGGTTCTTCGAATTTCGAACTTGCGAGGTAAATTTCGTCCAAATGGCTTTGATTCGGGCTTTGTGCTAGCTATGAAAATCCAAAGCCTGCAGCAACGATTCAATTCTCGGAGACTAGGCCGCCGGAGAATGCAATACCTTCCTTTGGATCTCTCTCATCGCCGTCACCGCTCTGTTGCTTCGGAAACTCTTCGACCTGCTTCGCTTAGGGGCCATAGCCAAGCCCGTCCCCGGGCCTCCTTCCCCTTCTTTCTACGGCCACCGCAACTTCATTTTCCGCCAAAATCTCACCGAGGTGTTAAGAGTGATTTGCACACGAAACATGGCTCTGTTGTGAAGATGTGGCGGGACGGACGCAGCTTTGGAGGTGAGGGATTAGGAGAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.75

Weight (kDa)

11.42

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AccBSI CCGCTC 2 cut(s) 153, 546
AccII CGCG 2 cut(s) 67, 138
AclWI GGATC 3 cut(s) 51, 122, 531
AcoI YGGCCR 1 cut(s) 632
AcsI RAATTY 3 cut(s) 355, 387, 407
AfiI CCNNNNNNNGG 5 cut(s) 183, 263, 520, 606, 607
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 4 cut(s) 19, 340, 362, 478
AjnI CCWGG 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 3 cut(s) 294, 446, 735
AluI AGCT 3 cut(s) 294, 446, 735
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 3 cut(s) 51, 122, 531
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 6 cut(s) 207, 213, 493, 586, 609, 632
ApeKI GCWGC 6 cut(s) 33, 74, 107, 170, 466, 732
ApoI RAATTY 3 cut(s) 355, 387, 407
AsiGI ACCGGT 1 cut(s) 220
Asp700I GAANNNNTTC 1 cut(s) 564
AspS9I GGNCC 6 cut(s) 133, 207, 213, 223, 586, 609
AsuC2I CCSGG 2 cut(s) 607, 608
AsuHPI GGTGA 4 cut(s) 103, 533, 656, 755
AsuII TTCGAA 2 cut(s) 385, 392
AsuNHI GCTAGC 1 cut(s) 442
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 2 cut(s) 133, 223
BbvI GCAGC 6 cut(s) 45, 86, 119, 157, 478, 744
BccI CCATC 1 cut(s) 223
BceAI ACGGC 2 cut(s) 522, 647
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 2 cut(s) 607, 608
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 3 cut(s) 375, 443, 491
BfmI CTRYAG 2 cut(s) 31, 464
BfuAI ACCTGC 1 cut(s) 580
BisI GCNGC 8 cut(s) 34, 75, 78, 108, 171, 467, 496, 733
BlsI GCNGC 8 cut(s) 35, 76, 79, 109, 172, 468, 497, 734
Bme1390I CCNGG 3 cut(s) 211, 607, 608
Bme18I GGWCC 2 cut(s) 133, 223
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 6 cut(s) 133, 207, 213, 223, 586, 609
BmiI GGNNCC 3 cut(s) 134, 225, 587
BmrFI CCNGG 3 cut(s) 211, 607, 608
BmsI GCATC 3 cut(s) 151, 157, 298
BmtI GCTAGC 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 581
Bpu14I TTCGAA 2 cut(s) 385, 392
BpuMI CCSGG 2 cut(s) 607, 608
BsaJI CCNNGG 7 cut(s) 136, 177, 210, 319, 605, 606, 667
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 263, 520, 606, 607
Bse118I RCCGGY 2 cut(s) 121, 220
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 7 cut(s) 136, 177, 210, 319, 605, 606, 667
BseLI CCNNNNNNNGG 5 cut(s) 183, 263, 520, 606, 607
BseXI GCAGC 6 cut(s) 45, 86, 119, 157, 478, 744
Bsh1236I CGCG 2 cut(s) 67, 138
BshFI GGCC 6 cut(s) 209, 215, 495, 588, 611, 634
BshTI ACCGGT 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 4 cut(s) 122, 221, 499, 607
BslFI GGGAC 4 cut(s) 62, 209, 588, 737
BslI CCNNNNNNNGG 5 cut(s) 183, 263, 520, 606, 607
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 4 cut(s) 62, 209, 588, 737
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 6 cut(s) 209, 215, 495, 588, 611, 634
BsoBI CYCGRG 1 cut(s) 606
Bsp119I TTCGAA 2 cut(s) 385, 392
Bsp143I GATC 4 cut(s) 43, 114, 242, 523
BspANI GGCC 6 cut(s) 209, 215, 495, 588, 611, 634
BspFNI CGCG 2 cut(s) 67, 138
BspLI GGNNCC 3 cut(s) 134, 225, 587
BspMAI CTGCAG 2 cut(s) 35, 468
BspMI ACCTGC 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 3 cut(s) 51, 122, 531
BspT104I TTCGAA 2 cut(s) 385, 392
BsrBI CCGCTC 2 cut(s) 153, 546
BsrFI RCCGGY 2 cut(s) 121, 220
BssAI RCCGGY 2 cut(s) 121, 220
BssECI CCNNGG 7 cut(s) 136, 177, 210, 319, 605, 606, 667
BssMI GATC 4 cut(s) 43, 114, 242, 523
BssT1I CCWWGG 2 cut(s) 177, 319
Bst2UI CCWGG 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 570
BstBI TTCGAA 2 cut(s) 385, 392
BstC8I GCNNGC 4 cut(s) 123, 329, 444, 464
BstDEI CTNAG 1 cut(s) 581
BstDSI CCRYGG 1 cut(s) 136
BstFNI CGCG 2 cut(s) 67, 138
BstKTI GATC 4 cut(s) 46, 117, 245, 526
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 4 cut(s) 43, 114, 242, 523
BstMWI GCNNNNNNNGC 2 cut(s) 170, 543
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 209, 605, 606
BstSFI CTRYAG 2 cut(s) 31, 464
BstUI CGCG 2 cut(s) 67, 138
BstV1I GCAGC 6 cut(s) 45, 86, 119, 157, 478, 744
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 6 cut(s) 209, 215, 495, 588, 611, 634
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 518
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 4 cut(s) 123, 329, 444, 464
Cfr10I RCCGGY 2 cut(s) 121, 220
Cfr13I GGNCC 6 cut(s) 133, 207, 213, 223, 586, 609
Cfr42I CCGCGG 1 cut(s) 139
Cfr9I CCCGGG 1 cut(s) 606
CseI GACGC 2 cut(s) 73, 738
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 3 cut(s) 118, 283, 698
DdeI CTNAG 1 cut(s) 581
DpnI GATC 4 cut(s) 45, 116, 244, 525
DpnII GATC 4 cut(s) 43, 114, 242, 523
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 2 cut(s) 140, 642
Eco130I CCWWGG 2 cut(s) 177, 319
Eco47I GGWCC 2 cut(s) 133, 223
Eco88I CYCGRG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 2 cut(s) 177, 319
ErhI CCWWGG 2 cut(s) 177, 319
FaeI CATG 3 cut(s) 121, 286, 701
FaiI YATR 6 cut(s) 104, 119, 284, 449, 591, 699
FaqI GGGAC 4 cut(s) 62, 209, 588, 737
FatI CATG 3 cut(s) 117, 282, 697
FauI CCCGC 2 cut(s) 60, 714
Fnu4HI GCNGC 8 cut(s) 34, 75, 78, 108, 171, 467, 496, 733
Fsp4HI GCNGC 8 cut(s) 34, 75, 78, 108, 171, 467, 496, 733
FspBI CTAG 3 cut(s) 375, 443, 491
GluI GCNGC 8 cut(s) 34, 75, 78, 108, 171, 467, 496, 733
HaeIII GGCC 6 cut(s) 209, 215, 495, 588, 611, 634
HapII CCGG 4 cut(s) 122, 221, 499, 607
HgaI GACGC 2 cut(s) 73, 738
Hin1II CATG 3 cut(s) 121, 286, 701
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 336, 371, 428, 474
HpaII CCGG 4 cut(s) 122, 221, 499, 607
HphI GGTGA 4 cut(s) 103, 533, 656, 755
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 298, 486, 559
Hpy188III TCNNGA 2 cut(s) 47, 226
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 6 cut(s) 13, 267, 524, 625, 631, 752
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 7 cut(s) 33, 74, 148, 331, 466, 508, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 543
HpyF3I CTNAG 1 cut(s) 581
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 3 cut(s) 121, 286, 701
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
KspI CCGCGG 1 cut(s) 139
Kzo9I GATC 4 cut(s) 43, 114, 242, 523
LpnPI CCDG 9 cut(s) 37, 135, 196, 223, 234, 476, 512, 585, 620
Lsp1109I GCAGC 6 cut(s) 45, 86, 119, 157, 478, 744
LweI GCATC 3 cut(s) 151, 157, 298
MaeI CTAG 3 cut(s) 375, 443, 491
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 539
MalI GATC 4 cut(s) 45, 116, 244, 525
MbiI CCGCTC 2 cut(s) 153, 546
MboI GATC 4 cut(s) 43, 114, 242, 523
MboII GAAGA 4 cut(s) 374, 374, 557, 724
MflI RGATCY 1 cut(s) 523
MluCI AATT 4 cut(s) 355, 387, 407, 478
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 9 cut(s) 105, 134, 292, 342, 395, 622, 662, 734, 739
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 2 cut(s) 281, 669
MspA1I CMGCKG 2 cut(s) 77, 138
MspI CCGG 4 cut(s) 122, 221, 499, 607
MspR9I CCNGG 3 cut(s) 211, 607, 608
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 2 cut(s) 67, 138
MwoI GCNNNNNNNGC 2 cut(s) 170, 543
NaeI GCCGGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 607, 608
NdeII GATC 4 cut(s) 43, 114, 242, 523
NgoMIV GCCGGC 1 cut(s) 121
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 3 cut(s) 121, 286, 701
NlaIV GGNNCC 3 cut(s) 134, 225, 587
NmuCI GTSAC 1 cut(s) 539
NspV TTCGAA 2 cut(s) 385, 392
OliI CACNNNNGTG 1 cut(s) 669
PctI GAATGC 1 cut(s) 510
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 336, 371, 428, 474
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 8 cut(s) 35, 76, 79, 109, 172, 468, 497, 734
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 3 cut(s) 134, 225, 587
PspPI GGNCC 6 cut(s) 133, 207, 213, 223, 586, 609
PstI CTGCAG 2 cut(s) 35, 468
PsuI RGATCY 1 cut(s) 523
RseI CAYNNNNRTG 2 cut(s) 281, 669
SacII CCGCGG 1 cut(s) 139
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 8 cut(s) 34, 75, 78, 108, 171, 467, 496, 733
Sau3AI GATC 4 cut(s) 43, 114, 242, 523
Sau96I GGNCC 6 cut(s) 133, 207, 213, 223, 586, 609
ScrFI CCNGG 3 cut(s) 211, 607, 608
SfaNI GCATC 3 cut(s) 151, 157, 298
SfcI CTRYAG 2 cut(s) 31, 464
Sfr303I CCGCGG 1 cut(s) 139
SfuI TTCGAA 2 cut(s) 385, 392
SgrBI CCGCGG 1 cut(s) 139
SinI GGWCC 2 cut(s) 133, 223
SmaI CCCGGG 1 cut(s) 608
SmiMI CAYNNNNRTG 2 cut(s) 281, 669
Sse9I AATT 4 cut(s) 355, 387, 407, 478
SspMI CTAG 3 cut(s) 375, 443, 491
StyD4I CCNGG 3 cut(s) 209, 605, 606
StyI CCWWGG 2 cut(s) 177, 319
TaiI ACGT 1 cut(s) 8
TaqI TCGA 4 cut(s) 353, 385, 392, 568
TasI AATT 4 cut(s) 355, 387, 407, 478
TauI GCSGC 2 cut(s) 80, 498
TfiI GAWTC 4 cut(s) 336, 371, 428, 474
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 6 cut(s) 33, 74, 107, 170, 466, 732
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 464, 635
TspGWI ACGGA 2 cut(s) 279, 741
TspMI CCCGGG 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 133, 223
XapI RAATTY 3 cut(s) 355, 387, 407
XmaI CCCGGG 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 3 cut(s) 375, 443, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.