Rroxscaffold_2G00078570

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
1843214 .. 1843778
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078570.1

Sequence Viewer

Length: 225 bp
ATGCAAAAAATACCCAGATTTGAGATCATGTTTCCGGCCACCATAGCCGGTGATTCTTGGGGGCTTTTGAAGCCCAGAGGCCGTAGATGCTTCCCTCCAAGCGGCTTGCAACGATTTCACCTGTGGAGCTCGAATTTTGAAGATTGGGATTCTAGGGTTCTTCGAGTTTCAAAACCTTGCGAGGTAAAATTCTACTTTTTGGCTCATAATCTGACTTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.73

Weight (kDa)

9.89

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 2 cut(s) 133, 188
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 70, 140, 171
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 131
AoxI GGCC 2 cut(s) 36, 79
ApoI RAATTY 2 cut(s) 133, 188
AsuHPI GGTGA 2 cut(s) 62, 110
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 66
BfaI CTAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmsI GCATC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 101
BshFI GGCC 2 cut(s) 38, 81
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 35, 48
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 2 cut(s) 38, 81
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 38, 81
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 44, 70, 87
BsuRI GGCC 2 cut(s) 38, 81
Cac8I GCNNGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 47
CviAII CATG 1 cut(s) 28
CviJI RGCY 8 cut(s) 38, 47, 64, 73, 81, 105, 129, 203
CviKI_1 RGCY 8 cut(s) 38, 47, 64, 73, 81, 105, 129, 203
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 31
FaiI YATR 3 cut(s) 29, 44, 207
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 38, 81
HapII CCGG 2 cut(s) 35, 48
Hin1II CATG 1 cut(s) 31
HinfI GANTC 2 cut(s) 53, 149
HpaII CCGG 2 cut(s) 35, 48
HphI GGTGA 2 cut(s) 62, 110
Hpy188I TCNGA 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 4, 109
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 70, 87
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 28, 48, 61, 88, 134
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 153
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 152, 152
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 133, 188
MnlI CCTC 3 cut(s) 71, 105, 175
MspI CCGG 2 cut(s) 35, 48
MwoI GCNNNNNNNGC 3 cut(s) 44, 70, 87
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 31
PfeI GAWTC 2 cut(s) 53, 149
PkrI GCNGC 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 131
SacI GAGCTC 1 cut(s) 131
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 131
SetI ASST 4 cut(s) 123, 131, 178, 186
SfaNI GCATC 1 cut(s) 77
Sse9I AATT 2 cut(s) 133, 188
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 153
SstI GAGCTC 1 cut(s) 131
TaqI TCGA 2 cut(s) 131, 163
TasI AATT 2 cut(s) 133, 188
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 53, 149
XapI RAATTY 2 cut(s) 133, 188
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.