Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002758.1

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

22238 .. 22830

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002758.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ctgagctccagcacagcggtcaccttcgccggccgatttcttcctccttcggccaccttttgcttcgattccaaagggaatcctgctctcctcagtcccctctacacgtctgtggtggtgattcgtcgtgggaagcaccgtagacaacgctacaaggccgagaagttgcggtggagctgcaaatcgcctcaaatcgccagatcggagatggcgtttccggccacctcaggcggtgattcttgggggcttttaaagcccagaggacttagattcttccctccaagcggcttgcaacgattcaacctgtggagctcgaatttggaagattgggaatctagggttcttcgaatttctgaacttgcgagaactttgatgttggaagttttgtcaaattttgactttggtttggtggcggtgccgccattgtggtggtgggttccggcggcttccggccacctctggggtagtttctgctcctcagtgcgatctactcgtcgatacgagcatttcgatatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

10.45

Isoelectric Point (pI)

68.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 169, 231, 285, 413, 419, 443
AcoI	YGGCCR	4 cut(s)	31, 51, 219, 451
AcsI	RAATTY	3 cut(s)	316, 348, 391
AfiI	CCNNNNNNNGG	2 cut(s)	284, 460
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	6, 177, 312
AluI	AGCT	3 cut(s)	6, 177, 312
Alw21I	GWGCWC	2 cut(s)	8, 314
AoxI	GGCC	5 cut(s)	31, 51, 156, 219, 451
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	3 cut(s)	316, 348, 391
AsuHPI	GGTGA	3 cut(s)	13, 130, 245
AsuII	TTCGAA	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	2 cut(s)	8, 314
Bbv12I	GWGCWC	2 cut(s)	8, 314
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	4 cut(s)	178, 286, 419, 444
BlsI	GCNGC	4 cut(s)	179, 287, 420, 445
BmgBI	CACGTC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	417, 438
Bpu14I	TTCGAA	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 460
Bse118I	RCCGGY	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	284, 460
BseMII	CTCAG	3 cut(s)	106, 240, 492
BseRI	GAGGAG	2 cut(s)	80, 466
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	33, 53, 158, 221, 453
BshNI	GGYRCC	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	2 cut(s)	8, 314
BsiSI	CCGG	4 cut(s)	30, 218, 440, 450
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	284, 460
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	33, 53, 158, 221, 453
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	8, 314
Bsp143I	GATC	2 cut(s)	200, 485
BspACI	CCGC	7 cut(s)	17, 169, 231, 285, 413, 419, 443
BspANI	GGCC	5 cut(s)	33, 53, 158, 221, 453
BspCNI	CTCAG	3 cut(s)	105, 239, 491
BspLI	GGNNCC	2 cut(s)	417, 438
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	2 cut(s)	200, 485
Bst4CI	ACNGT	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	31, 290
BstDEI	CTNAG	5 cut(s)	2, 92, 226, 266, 478
BstEII	GGTNACC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	203, 488
BstMBI	GATC	2 cut(s)	200, 485
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 253
BstPI	GGTNACC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	429
BstZI	CGGCCG	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	226
BsuRI	GGCC	5 cut(s)	33, 53, 158, 221, 453
BtrI	CACGTC	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	31, 290
Cfr10I	RCCGGY	1 cut(s)	29
DdeI	CTNAG	5 cut(s)	2, 92, 226, 266, 478
DpnI	GATC	2 cut(s)	202, 487
DpnII	GATC	2 cut(s)	200, 485
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	4 cut(s)	31, 51, 219, 451
EagI	CGGCCG	1 cut(s)	31
Ecl136II	GAGCTC	2 cut(s)	6, 312
EclXI	CGGCCG	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	8, 314
Eco52I	CGGCCG	1 cut(s)	31
Eco53kI	GAGCTC	2 cut(s)	6, 312
Eco81I	CCTNAGG	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	19
EcoICRI	GAGCTC	2 cut(s)	6, 312
EcoO65I	GGTNACC	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	8, 314
FaiI	YATR	2 cut(s)	515, 517
FaqI	GGGAC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	178, 286, 419, 444
FriOI	GRGCYC	2 cut(s)	8, 314
Fsp4HI	GCNGC	4 cut(s)	178, 286, 419, 444
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	4 cut(s)	178, 286, 419, 444
HaeIII	GGCC	5 cut(s)	33, 53, 158, 221, 453
HapII	CCGG	4 cut(s)	30, 218, 440, 450
HinfI	GANTC	7 cut(s)	68, 79, 121, 236, 270, 297, 332
HpaII	CCGG	4 cut(s)	30, 218, 440, 450
HphI	GGTGA	3 cut(s)	13, 130, 245
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	205, 355
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	2 cut(s)	129, 498
HpyAV	CCTTC	2 cut(s)	34, 57
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	180, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 253
HpyF3I	CTNAG	5 cut(s)	2, 92, 226, 266, 478
HpySE526I	ACGT	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	200, 485
LmnI	GCTCC	4 cut(s)	11, 174, 309, 479
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	202, 487
MboI	GATC	2 cut(s)	200, 485
MboII	GAAGA	4 cut(s)	32, 265, 335, 335
MhlI	GDGCHC	2 cut(s)	8, 314
MluCI	AATT	3 cut(s)	316, 348, 391
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	54, 101, 110, 198, 235, 254, 288, 467, 487
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	2 cut(s)	110, 427
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	4 cut(s)	30, 218, 440, 450
MwoI	GCNNNNNNNGC	2 cut(s)	218, 253
NaeI	GCCGGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	200, 485
NgoMIV	GCCGGC	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	417, 438
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 507
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	7 cut(s)	68, 79, 121, 236, 270, 297, 332
PkrI	GCNGC	4 cut(s)	179, 287, 420, 445
Psp124BI	GAGCTC	2 cut(s)	8, 314
PspEI	GGTNACC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	417, 438
RseI	CAYNNNNRTG	2 cut(s)	110, 427
SacI	GAGCTC	2 cut(s)	8, 314
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	4 cut(s)	178, 286, 419, 444
Sau3AI	GATC	2 cut(s)	200, 485
SduI	GDGCHC	2 cut(s)	8, 314
SetI	ASST	9 cut(s)	8, 26, 59, 110, 179, 227, 306, 314, 459
SfuI	TTCGAA	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	110, 427
Sse9I	AATT	3 cut(s)	316, 348, 391
SsiI	CCGC	7 cut(s)	17, 169, 231, 285, 413, 419, 443
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	2 cut(s)	8, 314
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	5 cut(s)	66, 314, 346, 496, 510
TasI	AATT	3 cut(s)	316, 348, 391
TauI	GCSGC	3 cut(s)	288, 421, 446
TfiI	GAWTC	7 cut(s)	68, 79, 121, 236, 270, 297, 332
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	1 cut(s)	486
XapI	RAATTY	3 cut(s)	316, 348, 391
XcmI	CCANNNNNNNNNTGG	2 cut(s)	205, 429
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.