RchiOBHm_Chr7g0219971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004553
Physical Location & Seq
Reverse (-)
38778380 .. 38778709
330 bp
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UTR
Exon/CDS
Intron
PRQ19689

Sequence Viewer

Length: 330 bp
ATGGGAACATATATACCTATTGAAATTGACCAATTGCAGCTCCTCAAAGTGTTGGATCTTAGCAATAACAACCTTTCTGGTAATATTCCAGACCAGTTATCTTACCTCAAGGATGTGGAGGTATTGGATCTCTCCATGAACCACTTGTCTGGAAAAATTCAGGCATCCACCGCAAGTTTTCATTTTATATCAAGTTCTAATGTCTCATACAATAATCTCCAAGGGCCAATACCATCAAGCACTCAGCTCCAAAGTTTCGATGCCTCTGCATTTGAATGGAAAATAAAACTTTGTGGTGCCACTTACACACGAGTGTCAGACAACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

4.78

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 15 - 52 1e-05 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 63, 135
AcsI RAATTY 1 cut(s) 156
AgsI TTSAA 2 cut(s) 23, 275
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 2 cut(s) 40, 247
AluI AGCT 2 cut(s) 40, 247
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 63, 135
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 296
BauI CACGAG 1 cut(s) 309
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 2 cut(s) 173, 250
BpuEI CTTGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 118, 164
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 1 cut(s) 226
BshNI GGYRCC 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 55, 127
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 2 cut(s) 63, 135
BspT107I GGYRCC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 55, 127
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 59, 243
BstF5I GGATG 2 cut(s) 118, 164
BstKTI GATC 2 cut(s) 58, 130
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 55, 127
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 55, 127
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 2 cut(s) 55, 127
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 118, 164
Cfr13I GGNCC 1 cut(s) 224
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 40, 226, 247
CviKI_1 RGCY 3 cut(s) 40, 226, 247
DdeI CTNAG 2 cut(s) 59, 243
DpnI GATC 2 cut(s) 57, 129
DpnII GATC 2 cut(s) 55, 127
Eco130I CCWWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 139
FaiI YATR 6 cut(s) 10, 12, 14, 137, 188, 208
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 2 cut(s) 125, 151
Fsp4HI GCNGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 89, 150
HpyCH4V TGCA 2 cut(s) 37, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 59, 243
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 2 cut(s) 55, 127
LmnI GCTCC 2 cut(s) 45, 252
LpnPI CCDG 5 cut(s) 63, 102, 107, 135, 146
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 173, 250
MalI GATC 2 cut(s) 57, 129
MboI GATC 2 cut(s) 55, 127
MfeI CAATTG 1 cut(s) 32
MflI RGATCY 2 cut(s) 55, 127
MluCI AATT 3 cut(s) 24, 32, 156
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 53, 112, 116, 274
MslI CAYNNNNRTG 2 cut(s) 274, 311
MunI CAATTG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 55, 127
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 311
PkrI GCNGC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 2 cut(s) 55, 127
RseI CAYNNNNRTG 2 cut(s) 274, 311
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 55, 127
Sau96I GGNCC 1 cut(s) 224
SetI ASST 6 cut(s) 19, 42, 75, 108, 123, 249
SfaNI GCATC 2 cut(s) 173, 250
SmiMI CAYNNNNRTG 2 cut(s) 274, 311
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 24, 32, 156
SsiI CCGC 1 cut(s) 171
SspI AATATT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 220
TaqI TCGA 1 cut(s) 258
TasI AATT 3 cut(s) 24, 32, 156
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 152, 170
XapI RAATTY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.