Rroxscaffold_2G00145370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004553
Physical Location & Seq
Reverse (-)
83343381 .. 83344189
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145370.1

Sequence Viewer

Length: 270 bp
ATGTCCGGAGGGTTCGTCCGCAACCGCACCGCAACCATCGCCGCCATTTCTACACCGAAGGAGGGACAAGACATCAAAGTGAGAAAAGAACCGTGGAAGGCGCTAGGAGGCCGAGAAGCTGCACAGCTCGAGCTGGAATTCGCCCGATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCTGACCTCGAATCGAGTTGATTCCAAAACGTATTTTGCTGGGCTTGAGCTATATTACAACTTTGTAGAAGACATCGAGGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.98

Weight (kDa)

8.64

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 4 cut(s) 19, 25, 30, 42
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 4 cut(s) 119, 127, 133, 232
AluI AGCT 4 cut(s) 119, 127, 133, 232
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 2 cut(s) 109, 166
ApeKI GCWGC 2 cut(s) 119, 150
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 106, 137
BccI CCATC 1 cut(s) 44
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 3 cut(s) 42, 120, 151
BlsI GCNGC 3 cut(s) 43, 121, 152
BmeT110I CYCGRG 1 cut(s) 128
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 106, 137
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 111, 168
BsiEI CGRYCG 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 6, 165
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 111, 168
BsoBI CYCGRG 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 5
BspACI CCGC 4 cut(s) 19, 25, 30, 42
BspANI GGCC 2 cut(s) 111, 168
BspEI TCCGGA 1 cut(s) 5
BspQI GCTCTTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 106, 137
BstV2I GAAGAC 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 2 cut(s) 111, 168
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 22
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 164
CviJI RGCY 7 cut(s) 111, 119, 127, 133, 168, 226, 232
CviKI_1 RGCY 7 cut(s) 111, 119, 127, 133, 168, 226, 232
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 166
Eco32I GATATC 1 cut(s) 173
Eco52I CGGCCG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 137
EcoRV GATATC 1 cut(s) 173
FaiI YATR 1 cut(s) 235
FaqI GGGAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 42, 120, 151
Fsp4HI GCNGC 3 cut(s) 42, 120, 151
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 102
GluI GCNGC 3 cut(s) 42, 120, 151
GsaI CCCAGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 111, 168
HapII CCGG 2 cut(s) 6, 165
HhaI GCGC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 2 cut(s) 193, 203
HpaII CCGG 2 cut(s) 6, 165
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 52, 91, 169
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 212
HspAI GCGC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 5
LguI GCTCTTC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 19, 119, 178, 207
Lsp1109I GCAGC 2 cut(s) 106, 137
LweI GCATC 1 cut(s) 137
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 212
MboII GAAGA 2 cut(s) 147, 263
MluCI AATT 1 cut(s) 137
MnlI CCTC 4 cut(s) 55, 101, 199, 253
MroI TCCGGA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 6, 165
MwoI GCNNNNNNNGC 1 cut(s) 38
NmeAIII GCCGAG 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 160
PfeI GAWTC 2 cut(s) 193, 203
PkrI GCNGC 3 cut(s) 43, 121, 152
PspFI CCCAGC 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 160
SatI GCNGC 3 cut(s) 42, 120, 151
SetI ASST 6 cut(s) 121, 129, 135, 191, 215, 234
SfaNI GCATC 1 cut(s) 137
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 128, 227
SmoI CTYRAG 2 cut(s) 128, 227
Sse9I AATT 1 cut(s) 137
SsiI CCGC 4 cut(s) 19, 25, 30, 42
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 215
TaqI TCGA 4 cut(s) 129, 191, 196, 258
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 193, 203
TseI GCWGC 2 cut(s) 119, 150
XapI RAATTY 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.