Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Forward (+)

35997960 .. 36000238

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTTTCTAATATATGTTATGGTTTTGGACCTGACTTGCTGGTCAGGAAGATCCTTCTGTATCTGAAGGGGAATGTTATTGATTACTTGTCACCATATTTGGATGTCCCGGATGCTTCAAAATTGCCTCAGGGGTGGTGTGGATGTGCACAATTCAGCTTCACAGTGAGTTCAACTGTGAACGACGACACCATCGACGACGCCGCTGATCTTCTCACCACCACTTGTAAATTCCAACCGTCTCCAATCTCCACATCCGTCTCCAATCTCGACGCGCCTGAACACAGAAACTTCTGGCAGCCGGTTGCGAATAATGACTTCATTGAGCTGGAAGTGCCTTCTGCATCAAATCTCTGGCACAAGAAGCTACTACAGCTCTCAGACTCCCTCACATTGGCGTTGAATCTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005783 GO:0005829 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0010992 GO:0010995 GO:0012505 GO:0016043 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019783 GO:0022411 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032984 GO:0035871 GO:0036211 GO:0036459 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045738 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051261 GO:0060255 GO:0065007 GO:0065008 GO:0070011 GO:0070536 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0101005 GO:0140096 GO:1901564 GO:1904331 GO:1904332 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001020 GO:2001021

KEGG Pathways

Metabolic & Signaling

ko04068 ko04340 ko04341 ko05168 ko05169 ko05203 map04068 map04340 map04341 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH RVT_3 UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

4.45

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	120, 174, 403
AluBI	AGCT	4 cut(s)	159, 328, 367, 376
AluI	AGCT	4 cut(s)	159, 328, 367, 376
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	246, 265
Alw44I	GTGCAC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	84, 208
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	246, 265
BfmI	CTRYAG	2 cut(s)	371, 410
BisI	GCNGC	2 cut(s)	204, 299
BlsI	GCNGC	2 cut(s)	205, 300
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	103, 353
BpuMI	CCSGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	109, 118, 149, 254
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	2 cut(s)	143, 393
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	110, 302
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	246, 265
BsmBI	CGTCTC	2 cut(s)	246, 265
BsmFI	GGGAC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	51, 208
BspACI	CCGC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	142, 392
BspFNI	CGCG	1 cut(s)	275
BspPI	GGATC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssMI	GATC	2 cut(s)	51, 208
BssNI	GRCGYC	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	166, 178, 240
BstACI	GRCGYC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	129, 379
BstF5I	GGATG	4 cut(s)	109, 118, 149, 254
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	2 cut(s)	54, 211
BstMAI	GTCTC	2 cut(s)	246, 265
BstMBI	GATC	2 cut(s)	51, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 364, 373
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	371, 410
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	109, 118, 149, 254
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	2 cut(s)	209, 281
CviJI	RGCY	5 cut(s)	159, 301, 328, 367, 376
CviKI_1	RGCY	5 cut(s)	159, 301, 328, 367, 376
DdeI	CTNAG	2 cut(s)	129, 379
DpnI	GATC	2 cut(s)	53, 210
DpnII	GATC	2 cut(s)	51, 208
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	129
Esp3I	CGTCTC	2 cut(s)	246, 265
FaiI	YATR	5 cut(s)	14, 16, 21, 97, 412
FaqI	GGGAC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	204, 299
FokI	GGATG	4 cut(s)	116, 125, 156, 241
Fsp4HI	GCNGC	2 cut(s)	204, 299
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	204, 299
HapII	CCGG	2 cut(s)	110, 302
HgaI	GACGC	2 cut(s)	209, 281
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	383, 403
HpaII	CCGG	2 cut(s)	110, 302
HphI	GGTGA	2 cut(s)	84, 208
Hpy166II	GTNNAC	2 cut(s)	149, 181
Hpy188I	TCNGA	2 cut(s)	66, 382
Hpy188III	TCNNGA	2 cut(s)	46, 269
Hpy8I	GTNNAC	2 cut(s)	149, 181
Hpy99I	CGWCG	4 cut(s)	188, 200, 203, 275
HpyAV	CCTTC	3 cut(s)	61, 65, 348
HpyCH4III	ACNGT	3 cut(s)	166, 178, 240
HpyCH4V	TGCA	2 cut(s)	149, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 364, 373
HpyF3I	CTNAG	2 cut(s)	129, 379
Hsp92I	GRCGYC	1 cut(s)	201
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	51, 208
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	103, 353
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	53, 210
MboI	GATC	2 cut(s)	51, 208
MboII	GAAGA	2 cut(s)	61, 203
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	122, 152, 230
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	138, 398
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	110, 302
MspR9I	CCNGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	334, 364, 373
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	51, 208
NmuCI	GTSAC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	205, 300
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	51
SatI	GCNGC	2 cut(s)	204, 299
Sau3AI	GATC	2 cut(s)	51, 208
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	34, 161, 330, 369, 378
SfaNI	GCATC	2 cut(s)	103, 353
SfcI	CTRYAG	2 cut(s)	371, 410
SinI	GGWCC	1 cut(s)	29
Sse9I	AATT	3 cut(s)	122, 152, 230
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	166, 178, 240
TaqI	TCGA	2 cut(s)	195, 270
TasI	AATT	3 cut(s)	122, 152, 230
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	403
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	171
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.