Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

35453460 .. 35480852

Gene Structure 27393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTCATCACATATAAATATGAACCTCCGGAAGACGGTGATCAGGTTCCTAGAAGGACTCATGCCGTAGTGGAGCGAGGAAGCGAGAGGAAGCTTCGCGGAAAAAAGCGGGAAAATTCGAGTTTACTTGATTTTCGGGCATATATATATGGACTCACTTCCACAAATCAATCCTCAACAACTCAACGAGTTAAATCCAGAGGTTCCCATTCCTCGAAGATTATAACTCGCGGAAACGAACTTCTTCTAATACGAACCTACAAGACGATCTTTACGGTGCAAGTTTGGTTAAGAAAAGAGGCATCAAAGGATTCTTTGCAAAAGCTAGAAGTAAAGGGATCCTCCAAACTACACGCTAGCTTACTCTCGACCGCCGCAACCTTCTTCCCACCTCCACTCTTCCGACTCCTCCCACCCAGCCCGCCGCCGCCGCCATTACAAGTCTCCGTCCGCCGCCTATCCCGCTCCTCAAAAAACTCCTTAAAATATCATCCGACTCCGACCTCCTCGGCGGTGACGCCGCCACATCAAGCTCAACCTCATTCAGTCCCTCCTCATTGCACACCTCGTAGATCCGACGCTTCTACGGATCACCGAGCATATCGTACACCTCAATTGCTTGAACTTCACCTCGCCTCCTTGTTGTCCACCGATTCTTATCCGGGTGCTACTTCATCGCCAACCTCTTGTACGCCACCTCCCCTCCTCCGAGCAACCTACCCTCGCCCCGAGACCGTCCCATTGGGCGGGGTCATCCTGGGCCTCTACGGCCACCTCGTCCCTATCACCGTCGCGAATTTCAAGACCATGGCATTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0032991 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0044877 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

273

Amino Acids

30.33

Weight (kDa)

10.23

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	3 cut(s)	99, 231, 794
AccIII	TCCGGA	1 cut(s)	28
AclWI	GGATC	4 cut(s)	333, 346, 567, 597
AcoI	YGGCCR	1 cut(s)	769
AcsI	RAATTY	2 cut(s)	115, 796
AcyI	GRCGYC	1 cut(s)	518
AfaI	GTAC	2 cut(s)	607, 691
AfiI	CCNNNNNNNGG	2 cut(s)	35, 746
AgsI	TTSAA	2 cut(s)	623, 802
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	4 cut(s)	94, 325, 360, 533
AluI	AGCT	4 cut(s)	94, 325, 360, 533
Alw26I	GTCTC	2 cut(s)	448, 725
AlwI	GGATC	4 cut(s)	333, 346, 567, 597
Ama87I	CYCGRG	1 cut(s)	728
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	2 cut(s)	760, 769
ApoI	RAATTY	2 cut(s)	115, 796
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	760
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	5 cut(s)	50, 526, 584, 620, 778
AsuNHI	GCTAGC	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	728
BamHI	GGATCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	50, 784
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	2 cut(s)	448, 725
BfaI	CTAG	3 cut(s)	51, 326, 357
BglI	GCCNNNNNGGC	1 cut(s)	768
BisI	GCNGC	6 cut(s)	375, 425, 428, 431, 454, 521
BlsI	GCNGC	6 cut(s)	376, 426, 429, 432, 455, 522
Bme1390I	CCNGG	2 cut(s)	663, 758
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	760
BmiI	GGNNCC	3 cut(s)	48, 205, 340
BmrFI	CCNGG	2 cut(s)	663, 758
BmsI	GCATC	1 cut(s)	311
BmtI	GCTAGC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	3 cut(s)	507, 757, 807
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	6 cut(s)	620, 650, 682, 687, 712, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 746
Bse3DI	GCAATG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	3 cut(s)	507, 757, 807
BseGI	GGATG	2 cut(s)	490, 753
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	35, 746
BseMI	GCAATG	1 cut(s)	556
BseRI	GAGGAG	5 cut(s)	398, 457, 496, 543, 695
BseYI	CCCAGC	1 cut(s)	416
Bsh1236I	CGCG	3 cut(s)	99, 231, 794
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	762, 771
BsiEI	CGRYCG	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	2 cut(s)	29, 662
BslFI	GGGAC	3 cut(s)	533, 722, 764
BslI	CCNNNNNNNGG	2 cut(s)	35, 746
BsmAI	GTCTC	2 cut(s)	448, 725
BsmFI	GGGAC	3 cut(s)	533, 722, 764
BsnI	GGCC	2 cut(s)	762, 771
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	728
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	5 cut(s)	40, 267, 338, 572, 589
Bsp19I	CCATGG	1 cut(s)	807
Bsp68I	TCGCGA	1 cut(s)	794
BspANI	GGCC	2 cut(s)	762, 771
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	3 cut(s)	99, 231, 794
BspLI	GGNNCC	3 cut(s)	48, 205, 340
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	4 cut(s)	333, 346, 567, 597
BspTNI	GGTCTC	1 cut(s)	725
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	507, 757, 807
BssMI	GATC	5 cut(s)	40, 267, 338, 572, 589
BssNI	GRCGYC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	4 cut(s)	38, 277, 736, 790
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	358, 422
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	490, 753
BstFNI	CGCG	3 cut(s)	99, 231, 794
BstKTI	GATC	5 cut(s)	43, 270, 341, 575, 592
BstMAI	GTCTC	2 cut(s)	448, 725
BstMBI	GATC	5 cut(s)	40, 267, 338, 572, 589
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	430, 462, 768
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	661, 756
BstUI	CGCG	3 cut(s)	99, 231, 794
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	338, 572
BstYI	RGATCY	2 cut(s)	338, 572
BsuRI	GGCC	2 cut(s)	762, 771
BtgI	CCRYGG	1 cut(s)	807
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	2 cut(s)	490, 753
BtuMI	TCGCGA	1 cut(s)	794
Cac8I	GCNNGC	2 cut(s)	358, 422
Cfr13I	GGNCC	1 cut(s)	760
CseI	GACGC	2 cut(s)	526, 587
Csp6I	GTAC	2 cut(s)	606, 690
CviAII	CATG	2 cut(s)	62, 808
CviJI	RGCY	7 cut(s)	94, 325, 360, 420, 533, 762, 771
CviKI_1	RGCY	7 cut(s)	94, 325, 360, 420, 533, 762, 771
CviQI	GTAC	2 cut(s)	606, 690
DpnI	GATC	5 cut(s)	42, 269, 340, 574, 591
DpnII	GATC	5 cut(s)	40, 267, 338, 572, 589
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	807
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	2 cut(s)	65, 811
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	3 cut(s)	533, 722, 764
FatI	CATG	2 cut(s)	61, 807
FauI	CCCGC	4 cut(s)	102, 429, 470, 740
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	6 cut(s)	375, 425, 428, 431, 454, 521
FokI	GGATG	2 cut(s)	477, 740
Fsp4HI	GCNGC	6 cut(s)	375, 425, 428, 431, 454, 521
FspBI	CTAG	3 cut(s)	51, 326, 357
GluI	GCNGC	6 cut(s)	375, 425, 428, 431, 454, 521
GsaI	CCCAGC	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	762, 771
HapII	CCGG	2 cut(s)	29, 662
HgaI	GACGC	2 cut(s)	526, 587
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	65, 811
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	6 cut(s)	58, 153, 311, 405, 496, 653
HpaII	CCGG	2 cut(s)	29, 662
HphI	GGTGA	5 cut(s)	50, 526, 584, 620, 778
Hpy166II	GTNNAC	3 cut(s)	125, 608, 648
Hpy188I	TCNGA	5 cut(s)	404, 495, 501, 577, 710
Hpy188III	TCNNGA	5 cut(s)	29, 198, 367, 793, 802
Hpy8I	GTNNAC	3 cut(s)	125, 608, 648
Hpy99I	CGWCG	2 cut(s)	581, 794
HpyAV	CCTTC	2 cut(s)	48, 391
HpyCH4III	ACNGT	4 cut(s)	38, 277, 736, 790
HpyCH4V	TGCA	3 cut(s)	280, 319, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	430, 462, 768
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	2 cut(s)	65, 811
Kpn2I	TCCGGA	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	40, 267, 338, 572, 589
LmnI	GCTCC	2 cut(s)	73, 470
LpnPI	CCDG	7 cut(s)	29, 42, 211, 430, 675, 743, 770
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	3 cut(s)	51, 326, 357
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	42, 269, 340, 574, 591
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	5 cut(s)	40, 267, 338, 572, 589
MboII	GAAGA	5 cut(s)	44, 229, 236, 376, 391
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	2 cut(s)	338, 572
MluCI	AATT	3 cut(s)	115, 614, 796
MlyI	GAGTC	4 cut(s)	52, 147, 399, 490
MmeI	TCCRAC	4 cut(s)	427, 518, 524, 600
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	3 cut(s)	192, 290, 482
MslI	CAYNNNNRTG	1 cut(s)	817
MspI	CCGG	2 cut(s)	29, 662
MspR9I	CCNGG	2 cut(s)	663, 758
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	3 cut(s)	99, 231, 794
MwoI	GCNNNNNNNGC	3 cut(s)	430, 462, 768
NciI	CCSGG	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	5 cut(s)	40, 267, 338, 572, 589
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	65, 811
NlaIV	GGNNCC	3 cut(s)	48, 205, 340
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	514
NruI	TCGCGA	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	311, 653
PkrI	GCNGC	6 cut(s)	376, 426, 429, 432, 455, 522
PleI	GAGTC	4 cut(s)	52, 147, 399, 490
PpsI	GAGTC	4 cut(s)	52, 147, 399, 490
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	3 cut(s)	48, 205, 340
PspPI	GGNCC	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	338, 572
RruI	TCGCGA	1 cut(s)	794
RsaI	GTAC	2 cut(s)	607, 691
RsaNI	GTAC	2 cut(s)	606, 690
RseI	CAYNNNNRTG	1 cut(s)	817
SaqAI	TTAA	3 cut(s)	192, 290, 482
SatI	GCNGC	6 cut(s)	375, 425, 428, 431, 454, 521
Sau3AI	GATC	5 cut(s)	40, 267, 338, 572, 589
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	4 cut(s)	52, 147, 399, 490
ScrFI	CCNGG	2 cut(s)	663, 758
SfaNI	GCATC	1 cut(s)	311
SfiI	GGCCNNNNNGGCC	1 cut(s)	768
SmiMI	CAYNNNNRTG	1 cut(s)	817
Sse9I	AATT	3 cut(s)	115, 614, 796
SspMI	CTAG	3 cut(s)	51, 326, 357
StyD4I	CCNGG	2 cut(s)	661, 756
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	4 cut(s)	38, 277, 736, 790
TaqI	TCGA	3 cut(s)	119, 215, 368
TasI	AATT	3 cut(s)	115, 614, 796
TauI	GCSGC	6 cut(s)	377, 427, 430, 433, 456, 523
TfiI	GAWTC	2 cut(s)	311, 653
Tru1I	TTAA	3 cut(s)	192, 290, 482
Tru9I	TTAA	3 cut(s)	192, 290, 482
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	36, 663
TspGWI	ACGGA	2 cut(s)	436, 602
XapI	RAATTY	2 cut(s)	115, 796
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	51, 326, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.