Rroxscaffold_5G00376620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004553
Physical Location & Seq
Forward (+)
57277224 .. 57281053
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376620.1

Sequence Viewer

Length: 237 bp
ATGGAAGGCGCTAGGAGGCCGAGAAGCTACACAGCTCGAGCTGGAATTCGCCCAAGCTGCTCTTTCTTCACCGGCCGATATCTCTCTCATACCATCTCTAATCGAGTTGATTCCAAAAGGGATTTTGCTGGGATTGAGCTAGAACCTTTCGCCCTCCACCACATCATTATCAAGTGTGGCTGGGATAAAATTCTTGTGGAGGCTGGAAGCATGTGGAGGTGTAAAGCGATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

9.81

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 45, 189
AluBI AGCT 5 cut(s) 27, 35, 41, 57, 139
AluI AGCT 5 cut(s) 27, 35, 41, 57, 139
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 2 cut(s) 17, 73
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 45, 189
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 36
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 101
BfaI CTAG 2 cut(s) 12, 140
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 71
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 44
BseYI CCCAGC 2 cut(s) 128, 180
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 19, 75
BsiEI CGRYCG 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 72
BsnI GGCC 2 cut(s) 19, 75
BsoBI CYCGRG 1 cut(s) 36
BspANI GGCC 2 cut(s) 19, 75
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 44
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 19, 75
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 71
CviAII CATG 1 cut(s) 211
CviJI RGCY 9 cut(s) 19, 27, 35, 41, 57, 75, 139, 180, 203
CviKI_1 RGCY 9 cut(s) 19, 27, 35, 41, 57, 75, 139, 180, 203
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 73
Eco32I GATATC 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 45
EcoRV GATATC 1 cut(s) 80
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 90, 212
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 12, 140
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 58
GsaI CCCAGC 2 cut(s) 132, 184
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 19, 75
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 27, 85, 114, 166, 189
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 12, 140
MboII GAAGA 1 cut(s) 58
MluCI AATT 2 cut(s) 45, 189
MnlI CCTC 4 cut(s) 9, 164, 193, 210
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 57
NlaIII CATG 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 45
NspI RCATGY 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 59
PspFI CCCAGC 2 cut(s) 128, 180
PspXI VCTCGAGB 1 cut(s) 36
SatI GCNGC 1 cut(s) 58
SetI ASST 7 cut(s) 29, 37, 43, 59, 141, 148, 221
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 45, 189
SspMI CTAG 2 cut(s) 12, 140
TaqI TCGA 2 cut(s) 37, 103
TasI AATT 2 cut(s) 45, 189
TfiI GAWTC 1 cut(s) 110
TseI GCWGC 1 cut(s) 57
XapI RAATTY 2 cut(s) 45, 189
XceI RCATGY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 2 cut(s) 12, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.