Rroxscaffold_1G00033050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004553
Physical Location & Seq
Reverse (-)
47530742 .. 47538643
7902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033050.1

Sequence Viewer

Length: 474 bp
ATGCTCGTCTTGATGAAGTTGATGGCCCCAAGGCCAACTCCAATCCGCCTTCTCCGGCCGGACTCGGTGAGAAGAAGGAACCACGGCGTGAGTAAACTCGCCGATACCGAAACAAGCGATAATGTTGTAGACAAGAATAAGGAGAAGTTTAAGGTCTATACTCGAAAGGGCAAGGAGGTGATGGCACCTAAGAAAAATACTAGGCGTGCTCTTATCAAGCCGTGGATAAGCTTCAAGGATGCTGCCCAAGGGCAAGGCACTATTGTGATTGAAGACATCAAAGTGAGAAAAGAACCGTGGAAGGCGCTAGGAGGCAGAGAAGCTGCACGGCTCGAGCTGGAATTCGCCCGATGCTGCTCTTCCTTCACCGGCCGATATCTCTCTCATCCGACCTCGAATCGAGTTGATTTCAAAAGGTATTTTTCTGGGCTTGAGCTATATTACAACTTTTTAGAAGACATCGAGGGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.16

Weight (kDa)

10.0

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 129
AciI CCGC 1 cut(s) 46
AcoI YGGCCR 2 cut(s) 56, 370
AcsI RAATTY 1 cut(s) 341
AdeI CACNNNGTG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 235, 272, 412
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 4 cut(s) 231, 323, 337, 436
AluI AGCT 4 cut(s) 231, 323, 337, 436
Alw21I GWGCWC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 4 cut(s) 24, 32, 56, 370
ApeKI GCWGC 3 cut(s) 242, 323, 354
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 3 cut(s) 79, 190, 358
AvaI CYCGRG 1 cut(s) 332
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 279, 462
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 3 cut(s) 229, 310, 341
BccI CCATC 2 cut(s) 16, 175
BceAI ACGGC 3 cut(s) 100, 205, 344
BfaI CTAG 2 cut(s) 201, 308
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 3 cut(s) 243, 324, 355
BlsI GCNGC 3 cut(s) 244, 325, 356
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 3 cut(s) 27, 80, 186
BmsI GCATC 2 cut(s) 229, 341
BpiI GAAGAC 2 cut(s) 279, 462
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 29, 82, 221, 247, 296
Bse118I RCCGGY 1 cut(s) 368
BseDI CCNNGG 5 cut(s) 29, 82, 221, 247, 296
BseGI GGATG 2 cut(s) 244, 385
BseX3I CGGCCG 2 cut(s) 56, 370
BseXI GCAGC 3 cut(s) 229, 310, 341
BsgI GTGCAG 1 cut(s) 309
Bsh1285I CGRYCG 2 cut(s) 59, 373
BshFI GGCC 4 cut(s) 26, 34, 58, 372
BshNI GGYRCC 1 cut(s) 184
BsiEI CGRYCG 2 cut(s) 59, 373
BsiHKAI GWGCWC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 55, 59, 369
BsnI GGCC 4 cut(s) 26, 34, 58, 372
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 211
BspACI CCGC 1 cut(s) 46
BspANI GGCC 4 cut(s) 26, 34, 58, 372
BspLI GGNNCC 3 cut(s) 27, 80, 186
BspQI GCTCTTC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 5 cut(s) 29, 82, 221, 247, 296
BssT1I CCWWGG 2 cut(s) 29, 247
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 364
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 3 cut(s) 82, 221, 296
BstF5I GGATG 2 cut(s) 244, 385
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstMCI CGRYCG 2 cut(s) 59, 373
BstV1I GCAGC 3 cut(s) 229, 310, 341
BstV2I GAAGAC 2 cut(s) 279, 462
BstZI CGGCCG 2 cut(s) 56, 370
BsuRI GGCC 4 cut(s) 26, 34, 58, 372
BtgI CCRYGG 3 cut(s) 82, 221, 296
BtsCI GGATG 2 cut(s) 244, 385
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 189
DraIII CACNNNGTG 1 cut(s) 88
EaeI YGGCCR 2 cut(s) 56, 370
EagI CGGCCG 2 cut(s) 56, 370
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 35
EclXI CGGCCG 2 cut(s) 56, 370
Eco130I CCWWGG 2 cut(s) 29, 247
Eco32I GATATC 1 cut(s) 377
Eco52I CGGCCG 2 cut(s) 56, 370
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 341
EcoRV GATATC 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 29, 247
ErhI CCWWGG 2 cut(s) 29, 247
FaiI YATR 2 cut(s) 159, 439
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 243, 324, 355
FokI GGATG 2 cut(s) 251, 372
Fsp4HI GCNGC 3 cut(s) 243, 324, 355
FspBI CTAG 2 cut(s) 201, 308
GlaI GCGC 1 cut(s) 306
GluI GCNGC 3 cut(s) 243, 324, 355
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 4 cut(s) 26, 34, 58, 372
HapII CCGG 3 cut(s) 55, 59, 369
HhaI GCGC 1 cut(s) 307
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 62, 397
HpaII CCGG 3 cut(s) 55, 59, 369
HphI GGTGA 3 cut(s) 79, 190, 358
Hpy166II GTNNAC 2 cut(s) 95, 130
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 95, 130
HpyAV CCTTC 4 cut(s) 59, 69, 295, 373
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 189
HspAI GCGC 1 cut(s) 305
LguI GCTCTTC 1 cut(s) 364
LpnPI CCDG 5 cut(s) 68, 72, 323, 382, 411
Lsp1109I GCAGC 3 cut(s) 229, 310, 341
LweI GCATC 2 cut(s) 229, 341
MaeI CTAG 2 cut(s) 201, 308
MboII GAAGA 4 cut(s) 84, 284, 351, 467
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 4 cut(s) 169, 305, 403, 457
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 2 cut(s) 263, 281
MspI CCGG 3 cut(s) 55, 59, 369
NlaIV GGNNCC 3 cut(s) 27, 80, 186
OliI CACNNNNGTG 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 244, 325, 356
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 27, 80, 186
PspPI GGNCC 1 cut(s) 25
PspXI VCTCGAGB 1 cut(s) 332
RseI CAYNNNNRTG 2 cut(s) 263, 281
SapI GCTCTTC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 243, 324, 355
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 156, 180, 190, 233, 325, 339, 395, 419, 438
SfaNI GCATC 2 cut(s) 229, 341
Sfr274I CTCGAG 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 263, 281
SmlI CTYRAG 2 cut(s) 332, 431
SmoI CTYRAG 2 cut(s) 332, 431
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 201, 308
StyI CCWWGG 2 cut(s) 29, 247
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 5 cut(s) 163, 333, 395, 400, 462
TasI AATT 1 cut(s) 341
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 3 cut(s) 242, 323, 354
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 2 cut(s) 201, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.