RchiOBHm_Chr2g0131311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004553
Physical Location & Seq
Reverse (-)
47422057 .. 47424229
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50267

Sequence Viewer

Length: 282 bp
ATGGAAACTTACCGAGCTCTCCCTTTTTCTCCTCTGCGCTCCCCGTCGCATTTTTCTGGGGTCTTCTTTGTCCGGCCATATCTTCCTCCACAGGCCTCCAATCGACTTGATTCCAAAAGCAATTTTTCTCACCTTGACGTCGTCTATAACTTCTCAGAAGACATCGGGGTGAAAACCGAACTGTGGAGGGCGCTGCAAGGCCGAGAAGCTGCACAGCTCGAGCTGGAAATCGCCTCCCTTCACCGGTTGATATCTTCCGATTCCGGCCACCTCCGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

8.21

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AcoI YGGCCR 2 cut(s) 74, 265
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 183, 243
AgeI ACCGGT 1 cut(s) 243
AluBI AGCT 4 cut(s) 17, 209, 217, 223
AluI AGCT 4 cut(s) 17, 209, 217, 223
Alw21I GWGCWC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 4 cut(s) 74, 93, 199, 265
ApeKI GCWGC 2 cut(s) 193, 209
AsiGI ACCGGT 1 cut(s) 243
AspLEI GCGC 2 cut(s) 39, 193
AsuHPI GGTGA 3 cut(s) 122, 181, 233
AvaI CYCGRG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 55, 165
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 180, 196
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 194, 210
BlsI GCNGC 2 cut(s) 195, 211
BmeT110I CYCGRG 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 55, 165
BsaHI GRCGYC 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 243
Bse118I RCCGGY 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 183, 243
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 180, 196
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 4 cut(s) 76, 95, 201, 267
BshTI ACCGGT 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 73, 244, 264, 274
BslI CCNNNNNNNGG 2 cut(s) 183, 243
BsnI GGCC 4 cut(s) 76, 95, 201, 267
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 19
BspANI GGCC 4 cut(s) 76, 95, 201, 267
BspCNI CTCAG 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 39, 193
BstV1I GCAGC 2 cut(s) 180, 196
BstV2I GAAGAC 2 cut(s) 55, 165
BsuRI GGCC 4 cut(s) 76, 95, 201, 267
CfoI GCGC 2 cut(s) 39, 193
Cfr10I RCCGGY 1 cut(s) 243
CspAI ACCGGT 1 cut(s) 243
CviJI RGCY 8 cut(s) 17, 76, 95, 201, 209, 217, 223, 267
CviKI_1 RGCY 8 cut(s) 17, 76, 95, 201, 209, 217, 223, 267
DdeI CTNAG 1 cut(s) 154
EaeI YGGCCR 2 cut(s) 74, 265
Ecl136II GAGCTC 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 17
EcoRV GATATC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 19
FaiI YATR 2 cut(s) 79, 147
Fnu4HI GCNGC 2 cut(s) 194, 210
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 194, 210
GlaI GCGC 2 cut(s) 38, 192
GluI GCNGC 2 cut(s) 194, 210
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 4 cut(s) 76, 95, 201, 267
HapII CCGG 4 cut(s) 73, 244, 264, 274
HhaI GCGC 2 cut(s) 39, 193
Hin1I GRCGYC 1 cut(s) 138
Hin6I GCGC 2 cut(s) 37, 191
HinP1I GCGC 2 cut(s) 37, 191
HinfI GANTC 2 cut(s) 110, 260
HpaII CCGG 4 cut(s) 73, 244, 264, 274
HphI GGTGA 3 cut(s) 122, 181, 233
Hpy188I TCNGA 2 cut(s) 157, 259
Hpy99I CGWCG 2 cut(s) 49, 143
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 196, 212
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 138
HspAI GCGC 2 cut(s) 37, 191
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 42, 77, 86, 209, 257, 277
Lsp1109I GCAGC 2 cut(s) 180, 196
MaeII ACGT 1 cut(s) 138
MboII GAAGA 4 cut(s) 55, 74, 170, 246
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 121
MnlI CCTC 6 cut(s) 42, 96, 106, 180, 244, 281
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 4 cut(s) 73, 244, 264, 274
NmeAIII GCCGAG 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 218
PceI AGGCCT 1 cut(s) 95
PfeI GAWTC 2 cut(s) 110, 260
PflFI GACNNNGTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 2 cut(s) 195, 211
Psp124BI GAGCTC 1 cut(s) 19
PspXI VCTCGAGB 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 19
SatI GCNGC 2 cut(s) 194, 210
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 19, 135, 141, 211, 219, 225, 273
Sfr274I CTCGAG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 121
SseBI AGGCCT 1 cut(s) 95
SstI GAGCTC 1 cut(s) 19
StuI AGGCCT 1 cut(s) 95
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 103, 219
TasI AATT 1 cut(s) 121
TfiI GAWTC 2 cut(s) 110, 260
TseI GCWGC 2 cut(s) 193, 209
Tth111I GACNNNGTC 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 218
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.