Rroxscaffold_4G00321200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004553
Physical Location & Seq
Reverse (-)
50458373 .. 50465621
7249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321200.1

Sequence Viewer

Length: 306 bp
ATGCACTTCTGGGGATGTAGATGCTTCCCTCCAAGCGGCTTGCAACGATTTAGCATGTGGAGCTCGAATTTGGAAGATTGGGAATCTAGGGTTCTTCGAATTTCTGAACTTGCGAGTCAGTTAAAACTTCCTAGAAGACATCAAAGTGAAAAAAGAACCGTGGAAGGTGCTAGGAGGCCGAGAAGCTACACAGCTCGAGCTGGAATTCGCCCGAGCTGCTCTTTATTCACCGGCCGATATCTCTCTCATAAGACCTCTAATCGAGTTGATTCCAAAAGGGATTTTTCTGGGCTTGAGCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.82

Weight (kDa)

10.52

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 3 cut(s) 67, 99, 204
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 6 cut(s) 63, 186, 194, 200, 216, 298
AluI AGCT 6 cut(s) 63, 186, 194, 200, 216, 298
Alw21I GWGCWC 1 cut(s) 65
Ama87I CYCGRG 2 cut(s) 195, 211
AoxI GGCC 2 cut(s) 176, 232
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 3 cut(s) 67, 99, 204
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 97
AvaI CYCGRG 2 cut(s) 195, 211
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 203
BfaI CTAG 4 cut(s) 87, 132, 171, 299
BisI GCNGC 2 cut(s) 37, 217
BlsI GCNGC 2 cut(s) 38, 218
BmeT110I CYCGRG 2 cut(s) 195, 211
BmsI GCATC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 35
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 178, 234
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 2 cut(s) 195, 211
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 2 cut(s) 178, 234
BsoBI CYCGRG 2 cut(s) 195, 211
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 65
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 178, 234
BspT104I TTCGAA 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 20
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 60, 216
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 142
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 178, 234
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 230
CviAII CATG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 232
EagI CGGCCG 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 239
Eco52I CGGCCG 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 2 cut(s) 195, 211
EcoICRI GAGCTC 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 249
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 37, 217
FokI GGATG 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 37, 217
FspBI CTAG 4 cut(s) 87, 132, 171, 299
GluI GCNGC 2 cut(s) 37, 217
HaeIII GGCC 2 cut(s) 178, 234
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 58
HinfI GANTC 3 cut(s) 83, 115, 269
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 4, 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 216
Hsp92II CATG 1 cut(s) 58
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 186, 244, 273
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 11
MaeI CTAG 4 cut(s) 87, 132, 171, 299
MboII GAAGA 3 cut(s) 86, 86, 147
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 67, 99, 204
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 3 cut(s) 39, 168, 265
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 60, 216
NlaIII CATG 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 204
NspI RCATGY 1 cut(s) 58
NspV TTCGAA 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 195
PfeI GAWTC 2 cut(s) 83, 269
PkrI GCNGC 2 cut(s) 38, 218
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 65
PspXI VCTCGAGB 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 2 cut(s) 37, 217
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 65
SetI ASST 8 cut(s) 65, 169, 188, 196, 202, 218, 257, 300
SfaNI GCATC 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 195, 293
SmoI CTYRAG 2 cut(s) 195, 293
Sse9I AATT 3 cut(s) 67, 99, 204
SsiI CCGC 1 cut(s) 36
SspMI CTAG 4 cut(s) 87, 132, 171, 299
SstI GAGCTC 1 cut(s) 65
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 65, 97, 196, 262
TasI AATT 3 cut(s) 67, 99, 204
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 83, 269
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseI GCWGC 1 cut(s) 216
XapI RAATTY 3 cut(s) 67, 99, 204
XceI RCATGY 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 195
XspI CTAG 4 cut(s) 87, 132, 171, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.