Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

92163251 .. 92166947

Gene Structure 3697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATCTGGTGGAGGATGGGTCTGATGGATATCCCCGTGCGGCGGAATTGTGTATGTATATATATGCTCTTGGCTATCACGAAGGAAGAGAGAAGAATAGGCACCATCGACCCAATCGGAGTTCAACCGTGAATGACGACGCCACCAATCTTCTCACCATCACCTGCAAATTCCGACCGTCTCCAATCTCCGCATCCGTCTCCAATATTGAAGCTCCTGAACATAGAAACTCCCGGCAGCCCGGTCGGGGAAATAACTTCATCGAGCTGGAAGCGCCTTCTGCATCAAATCTCCAGCACGTGAAGCTACTACAGCTCTCAGACTCCCTCACATTGGCGCTGCATCTAACTGTAGCTCTCAGACTCACTGACATCAGTTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.28

Weight (kDa)

6.58

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	102
AciI	CCGC	3 cut(s)	41, 44, 192
AcsI	RAATTY	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	43, 248, 334
AgsI	TTSAA	2 cut(s)	126, 212
AluBI	AGCT	5 cut(s)	215, 268, 307, 316, 356
AluI	AGCT	5 cut(s)	215, 268, 307, 316, 356
Alw26I	GTCTC	2 cut(s)	186, 205
ApeKI	GCWGC	2 cut(s)	238, 340
ApoI	RAATTY	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	277, 340
AsuC2I	CCSGG	2 cut(s)	235, 243
AsuHPI	GGTGA	2 cut(s)	148, 154
BanI	GGYRCC	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	250, 327
BccI	CCATC	4 cut(s)	11, 20, 114, 167
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BcnI	CCSGG	2 cut(s)	235, 243
BcoDI	GTCTC	2 cut(s)	186, 205
BfmI	CTRYAG	2 cut(s)	311, 351
BfoI	RGCGCY	2 cut(s)	278, 341
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	42, 239, 341
BlsI	GCNGC	3 cut(s)	43, 240, 342
Bme1390I	CCNGG	2 cut(s)	235, 243
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	2 cut(s)	235, 243
BmsI	GCATC	3 cut(s)	203, 293, 352
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	235, 243
BsaAI	YACGTR	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 248, 334
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	30
BseGI	GGATG	2 cut(s)	22, 194
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	43, 248, 334
BseMII	CTCAG	2 cut(s)	333, 373
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	250, 327
Bsh1285I	CGRYCG	2 cut(s)	179, 247
BshNI	GGYRCC	1 cut(s)	102
BsiEI	CGRYCG	2 cut(s)	179, 247
BsiSI	CCGG	2 cut(s)	235, 243
BslI	CCNNNNNNNGG	3 cut(s)	43, 248, 334
BsmAI	GTCTC	2 cut(s)	186, 205
BsmBI	CGTCTC	2 cut(s)	186, 205
BspACI	CCGC	3 cut(s)	41, 44, 192
BspCNI	CTCAG	2 cut(s)	332, 372
BspLI	GGNNCC	1 cut(s)	104
BspMI	ACCTGC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	382
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	130, 180, 352
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	319, 359
BstF5I	GGATG	2 cut(s)	22, 194
BstH2I	RGCGCY	2 cut(s)	278, 341
BstHHI	GCGC	2 cut(s)	277, 340
BstMAI	GTCTC	2 cut(s)	186, 205
BstMCI	CGRYCG	2 cut(s)	179, 247
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 281, 304, 313
BstSCI	CCNGG	2 cut(s)	233, 241
BstSFI	CTRYAG	2 cut(s)	311, 351
BstV1I	GCAGC	2 cut(s)	250, 327
BtsCI	GGATG	2 cut(s)	22, 194
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	173
CfoI	GCGC	2 cut(s)	277, 340
CseI	GACGC	1 cut(s)	149
CviJI	RGCY	7 cut(s)	75, 215, 241, 268, 307, 316, 356
CviKI_1	RGCY	7 cut(s)	75, 215, 241, 268, 307, 316, 356
DdeI	CTNAG	2 cut(s)	319, 359
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	32
Esp3I	CGTCTC	2 cut(s)	186, 205
FaiI	YATR	6 cut(s)	56, 60, 62, 64, 66, 225
Fnu4HI	GCNGC	3 cut(s)	42, 239, 341
FokI	GGATG	2 cut(s)	29, 181
Fsp4HI	GCNGC	3 cut(s)	42, 239, 341
GlaI	GCGC	2 cut(s)	276, 339
GluI	GCNGC	3 cut(s)	42, 239, 341
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	2 cut(s)	278, 341
HapII	CCGG	2 cut(s)	235, 243
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	277, 340
Hin1I	GRCGYC	1 cut(s)	141
Hin6I	GCGC	2 cut(s)	275, 338
HinP1I	GCGC	2 cut(s)	275, 338
HinfI	GANTC	3 cut(s)	4, 323, 363
HpaII	CCGG	2 cut(s)	235, 243
HphI	GGTGA	2 cut(s)	148, 154
Hpy188I	TCNGA	5 cut(s)	25, 120, 176, 322, 362
Hpy188III	TCNNGA	2 cut(s)	80, 218
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	77, 288
HpyCH4III	ACNGT	3 cut(s)	130, 180, 352
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	168, 284, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 281, 304, 313
HpyF3I	CTNAG	2 cut(s)	319, 359
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	141
HspAI	GCGC	2 cut(s)	275, 338
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	178, 231, 248, 254, 256, 308
Lsp1109I	GCAGC	2 cut(s)	250, 327
LweI	GCATC	3 cut(s)	203, 293, 352
MaeII	ACGT	1 cut(s)	300
MboII	GAAGA	3 cut(s)	99, 106, 143
MluCI	AATT	2 cut(s)	47, 170
MlyI	GAGTC	2 cut(s)	317, 357
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	7, 338
MspI	CCGG	2 cut(s)	235, 243
MspR9I	CCNGG	2 cut(s)	235, 243
MwoI	GCNNNNNNNGC	4 cut(s)	274, 281, 304, 313
NciI	CCSGG	2 cut(s)	235, 243
NlaIV	GGNNCC	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	43, 240, 342
PleI	GAGTC	2 cut(s)	317, 357
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
PpsI	GAGTC	2 cut(s)	317, 357
Ppu21I	YACGTR	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	104
SatI	GCNGC	3 cut(s)	42, 239, 341
SchI	GAGTC	2 cut(s)	317, 357
ScrFI	CCNGG	2 cut(s)	235, 243
SetI	ASST	7 cut(s)	167, 217, 270, 303, 309, 318, 358
SfaNI	GCATC	3 cut(s)	203, 293, 352
SfcI	CTRYAG	2 cut(s)	311, 351
Sse9I	AATT	2 cut(s)	47, 170
SsiI	CCGC	3 cut(s)	41, 44, 192
SspI	AATATT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	233, 241
TaaI	ACNGT	3 cut(s)	130, 180, 352
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	109, 264
TasI	AATT	2 cut(s)	47, 170
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	2 cut(s)	238, 340
TspDTI	ATGAA	2 cut(s)	17, 250
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.