Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

56769094 .. 56780588

Gene Structure 11495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGAACCAAATTGGCTGGATTTTTTACAACGACTATAAAACATTACAATCTCTCCATCGAGCGTCAATTAAAACTTCTTAGAAGACATCAAAGTGAAAAAAGAACCGTGGAAGGCGCTAGGAGGCTGAGAAGCTACACAGCTCGAGCTGGAATTTGCCCGAGCTGCTCTTTCTTCACCGGCCGATATCTCTCTCATACGACCTCTAATCGAGTTGATTCCAAAAGGGATTTTTCTGGGCTTGAGCTAGAGCCTAAAGCAATGGTGTTTACATGCTCAGTAACTGATTGGATACCACCTCCAAGCATTGCTCCGATATTTTTGTCATCGGCAATTCTAAATGGTAATTTGGAGTATCTACTGCTAGTGACATGCTTTAAAGTTATATACTTTCTGATATATGTTATGGTTTTCGACTTGACTGGCTTGGTCAGGCGGATCCTTCTCTATCTGAAGGGGAATGTTGTTGATTACTTGTCACCATATTTCAATGTCCCGGATGCTTCAAAATTGCCTCAGGGGTGGTCTAGATGTGCACATTTCAGCTTGACAGTGGTTAATCAACTTCAACCCAGTGAATCAATAACAAAAGATTGGGTTCCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005783 GO:0005829 GO:0006282 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0010992 GO:0010995 GO:0012505 GO:0016043 GO:0016579 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019783 GO:0022411 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032984 GO:0035871 GO:0036211 GO:0036459 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045738 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051261 GO:0060255 GO:0065007 GO:0065008 GO:0070011 GO:0070536 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0101005 GO:0140096 GO:1901564 GO:1904331 GO:1904332 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001020 GO:2001021

KEGG Pathways

Metabolic & Signaling

ko04068 ko04340 ko04341 ko05168 ko05169 ko05203 map04068 map04340 map04341 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH RVT_3 UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

202

Amino Acids

23.05

Weight (kDa)

9.65

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	2 cut(s)	433, 446
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	473
AgsI	TTSAA	3 cut(s)	490, 507, 569
AluBI	AGCT	6 cut(s)	135, 143, 149, 165, 247, 546
AluI	AGCT	6 cut(s)	135, 143, 149, 165, 247, 546
Alw21I	GWGCWC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	433, 446
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	2 cut(s)	144, 160
AoxI	GGCC	1 cut(s)	181
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	119
AsuC2I	CCSGG	2 cut(s)	497, 603
AsuHPI	GGTGA	2 cut(s)	169, 471
AvaI	CYCGRG	2 cut(s)	144, 160
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	538
BamHI	GGATCC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	497, 603
BfaI	CTAG	4 cut(s)	120, 248, 365, 528
BfoI	RGCGCY	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	497, 603
BmeT110I	CYCGRG	2 cut(s)	144, 160
BmiI	GGNNCC	2 cut(s)	440, 600
BmrFI	CCNGG	2 cut(s)	497, 603
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	497, 603
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	427, 573
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	2 cut(s)	267, 306
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	2 cut(s)	267, 306
BseMII	CTCAG	3 cut(s)	119, 291, 530
BseNI	ACTGG	2 cut(s)	427, 573
BseSI	GKGCMC	1 cut(s)	538
BseX3I	CGGCCG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	2 cut(s)	144, 160
BsiSI	CCGG	3 cut(s)	180, 497, 603
BslFI	GGGAC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	2 cut(s)	144, 160
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	3 cut(s)	120, 290, 529
BspLI	GGNNCC	2 cut(s)	440, 600
BspPI	GGATC	2 cut(s)	433, 446
BsrDI	GCAATG	2 cut(s)	267, 306
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	427, 573
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	109, 553
BstDEI	CTNAG	4 cut(s)	80, 128, 277, 516
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNSI	RCATGY	2 cut(s)	276, 375
BstSCI	CCNGG	2 cut(s)	495, 601
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BstZI	CGGCCG	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	516
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	558, 580
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	273, 372
DdeI	CTNAG	4 cut(s)	80, 128, 277, 516
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DraI	TTTAAA	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	2 cut(s)	144, 160
EcoRV	GATATC	1 cut(s)	188
FaeI	CATG	2 cut(s)	276, 375
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	272, 371
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	4 cut(s)	120, 248, 365, 528
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	3 cut(s)	180, 497, 603
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	276, 375
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	218, 578
HpaII	CCGG	3 cut(s)	180, 497, 603
HphI	GGTGA	2 cut(s)	169, 471
Hpy166II	GTNNAC	2 cut(s)	270, 536
Hpy188I	TCNGA	3 cut(s)	315, 396, 453
Hpy188III	TCNNGA	1 cut(s)	528
Hpy8I	GTNNAC	2 cut(s)	270, 536
HpyAV	CCTTC	3 cut(s)	107, 448, 452
HpyCH4III	ACNGT	2 cut(s)	109, 553
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	4 cut(s)	80, 128, 277, 516
Hsp92II	CATG	2 cut(s)	276, 375
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	9 cut(s)	3, 135, 193, 222, 408, 418, 503, 510, 586
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	4 cut(s)	120, 248, 365, 528
MaeIII	GTNAC	3 cut(s)	280, 367, 477
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	2 cut(s)	96, 166
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	6 cut(s)	11, 68, 153, 333, 346, 509
MnlI	CCTC	4 cut(s)	117, 214, 309, 525
MseI	TTAA	4 cut(s)	71, 378, 558, 607
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	3 cut(s)	180, 497, 603
MspR9I	CCNGG	2 cut(s)	497, 603
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	2 cut(s)	497, 603
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	276, 375
NlaIV	GGNNCC	2 cut(s)	440, 600
NmuCI	GTSAC	2 cut(s)	367, 477
NspI	RCATGY	2 cut(s)	276, 375
PaeR7I	CTCGAG	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	218, 578
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	440, 600
PspXI	VCTCGAGB	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	71, 378, 558, 607
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	438
ScrFI	CCNGG	2 cut(s)	497, 603
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	8 cut(s)	137, 145, 151, 167, 206, 249, 301, 548
SfaNI	GCATC	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	144, 242
SmoI	CTYRAG	2 cut(s)	144, 242
Sse9I	AATT	6 cut(s)	11, 68, 153, 333, 346, 509
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	4 cut(s)	120, 248, 365, 528
StyD4I	CCNGG	2 cut(s)	495, 601
TaaI	ACNGT	2 cut(s)	109, 553
TaqI	TCGA	4 cut(s)	60, 145, 211, 414
TasI	AATT	6 cut(s)	11, 68, 153, 333, 346, 509
TfiI	GAWTC	2 cut(s)	218, 578
Tru1I	TTAA	4 cut(s)	71, 378, 558, 607
Tru9I	TTAA	4 cut(s)	71, 378, 558, 607
TscAI	CASTG	2 cut(s)	558, 580
TseFI	GTSAC	2 cut(s)	367, 477
TseI	GCWGC	1 cut(s)	165
Tsp45I	GTSAC	2 cut(s)	367, 477
TspRI	CASTG	2 cut(s)	558, 580
VneI	GTGCAC	1 cut(s)	534
XapI	RAATTY	1 cut(s)	153
XbaI	TCTAGA	1 cut(s)	527
XceI	RCATGY	2 cut(s)	276, 375
XhoI	CTCGAG	1 cut(s)	144
XspI	CTAG	4 cut(s)	120, 248, 365, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.