Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003861.1

Orthogroup ID

OG0004553

Physical Location & Seq

Genomic Coordinates Reverse (-)

14187 .. 15489

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003861.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgatgtctccaacaccggataagaccggggcaagtgttgatgtgatgtttttggaattgttggaggacattgatagtatagggaagtttgaatggggtgcgactatgctagctcatctgcaagtagagctgcaaaaaattggatcaacttcattggctgggcataggtattctttgatggtagacctgtgcacgacgctacaaggccgagaagtcgcacggtggagctgcaaatctcccagatcggagatcacgtttacggccaccatagtcgatgatccttgggggcttttgaagcccagaggacgtagatactctccacaaaacagcttgcaacgatttgatctgtggagatcgaattttgaagtttttgaaactagggttcatcggatccgtcgacttccaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

136

Amino Acids

15.68

Weight (kDa)

9.13

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004553)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g17200
rosa_chinensis	RchiOBHm_Chr2g0131311 RchiOBHm_Chr7g0219971
rosa_laevigata	RLG00000009451 RLG00000034059
rosa_multiflora	Rmu_sc0002758.1_g000005 Rmu_sc0003861.1_g000004 Rmu_sc0018646.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432220 Rroxscaffold_1G00030210 Rroxscaffold_1G00033050 Rroxscaffold_1G00034250 Rroxscaffold_1G00039200 Rroxscaffold_2G00078570 Rroxscaffold_2G00089680 Rroxscaffold_2G00145370 Rroxscaffold_4G00308230 Rroxscaffold_4G00318460 Rroxscaffold_4G00321200 Rroxscaffold_4G00322640 Rroxscaffold_4G00325620 Rroxscaffold_4G00325790 Rroxscaffold_5G00344550 Rroxscaffold_5G00346240 Rroxscaffold_5G00356260 Rroxscaffold_5G00363420 Rroxscaffold_5G00376620 Rroxscaffold_7G00197800 Rroxscaffold_7G00198690 Rroxscaffold_7G00200910
rosa_samantha	Rh1CG272800 Rh5AG536300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	183, 397
AclWI	GGATC	4 cut(s)	151, 272, 385, 398
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	358
AgsI	TTSAA	4 cut(s)	92, 295, 365, 374
AluBI	AGCT	4 cut(s)	113, 130, 228, 330
AluI	AGCT	4 cut(s)	113, 130, 228, 330
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	4 cut(s)	151, 272, 385, 398
AoxI	GGCC	2 cut(s)	205, 261
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	130, 228
ApoI	RAATTY	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	117, 215
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	110, 378
BisI	GCNGC	2 cut(s)	131, 229
BlsI	GCNGC	2 cut(s)	132, 230
Bme1390I	CCNGG	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	28
BmtI	GCTAGC	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	27, 281, 404
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
BseDI	CCNNGG	3 cut(s)	27, 281, 404
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	117, 215
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	207, 263
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	17, 27
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	207, 263
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
BspANI	GGCC	2 cut(s)	207, 263
BspLI	GGNNCC	1 cut(s)	392
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	4 cut(s)	151, 272, 385, 398
BssECI	CCNNGG	3 cut(s)	27, 281, 404
BssMI	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
BssT1I	CCWWGG	2 cut(s)	281, 404
Bst4CI	ACNGT	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	111, 332
BstKTI	GATC	7 cut(s)	146, 245, 252, 280, 346, 356, 393
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 295
BstSCI	CCNGG	1 cut(s)	26
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	117, 215
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	207, 263
Cac8I	GCNNGC	2 cut(s)	111, 332
CseI	GACGC	1 cut(s)	205
CviJI	RGCY	9 cut(s)	113, 130, 158, 207, 228, 263, 289, 298, 330
CviKI_1	RGCY	9 cut(s)	113, 130, 158, 207, 228, 263, 289, 298, 330
DpnI	GATC	7 cut(s)	145, 244, 251, 279, 345, 355, 392
DpnII	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
EaeI	YGGCCR	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	281, 404
EcoT14I	CCWWGG	2 cut(s)	281, 404
ErhI	CCWWGG	2 cut(s)	281, 404
FaiI	YATR	4 cut(s)	80, 107, 165, 269
FblI	GTMKAC	2 cut(s)	183, 397
Fnu4HI	GCNGC	2 cut(s)	131, 229
Fsp4HI	GCNGC	2 cut(s)	131, 229
FspBI	CTAG	2 cut(s)	110, 378
GluI	GCNGC	2 cut(s)	131, 229
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	207, 263
HapII	CCGG	2 cut(s)	17, 27
HgaI	GACGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HpaII	CCGG	2 cut(s)	17, 27
Hpy166II	GTNNAC	4 cut(s)	184, 192, 258, 398
Hpy188I	TCNGA	2 cut(s)	247, 390
Hpy8I	GTNNAC	4 cut(s)	184, 192, 258, 398
Hpy99I	CGWCG	2 cut(s)	199, 399
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	2 cut(s)	254, 307
HpyCH4V	TGCA	5 cut(s)	121, 133, 192, 231, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 295
HpySE526I	ACGT	2 cut(s)	254, 307
Kzo9I	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	30, 40, 144, 200, 253, 313
Lsp1109I	GCAGC	2 cut(s)	117, 215
MaeI	CTAG	2 cut(s)	110, 378
MaeII	ACGT	2 cut(s)	254, 307
MalI	GATC	7 cut(s)	145, 244, 251, 279, 345, 355, 392
MboI	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	3 cut(s)	56, 138, 358
MmeI	TCCRAC	2 cut(s)	35, 42
MnlI	CCTC	2 cut(s)	58, 296
MspI	CCGG	2 cut(s)	17, 27
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	127, 295
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
NheI	GCTAGC	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	392
NmeAIII	GCCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	251, 394
PkrI	GCNGC	2 cut(s)	132, 230
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	396
SatI	GCNGC	2 cut(s)	131, 229
Sau3AI	GATC	7 cut(s)	143, 242, 249, 277, 343, 353, 390
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	9 cut(s)	115, 132, 170, 189, 230, 257, 310, 332, 410
Sse9I	AATT	3 cut(s)	56, 138, 358
SspMI	CTAG	2 cut(s)	110, 378
StyD4I	CCNGG	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	281, 404
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	2 cut(s)	257, 310
TaqI	TCGA	3 cut(s)	273, 356, 397
TasI	AATT	3 cut(s)	56, 138, 358
TseI	GCWGC	2 cut(s)	130, 228
TspDTI	ATGAA	2 cut(s)	141, 374
TspGWI	ACGGA	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	183, 397
XspI	CTAG	2 cut(s)	110, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.