Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

27594650 .. 27596800

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGTTTAGAGTTCACTTGCATGCTGATCATGAGCAGAAAATTCTTCAAAACCAAATGAAACCCGAACATGAAGCCTCTTACTTGATTAATCAAAGACGATCTGCAAATTACAAACCAAATATTTGGAAGAATGATTTCCTAGATCAATCTCTTATCAGCAAATACGATGGAGATGAGTATCGGAAGCTGTCTGAGAAGTTAATAGAAGAAGTTAAGATTTATATATCTGCTGAAACAAAGGATTTAGTGGCTAAGTTGGAGCTCATTGACAGCGTCCGAAAACTAGGCCTCGCGAACCACTTCGAAAAGGAAATCAAGGAAGCCCTAGACGGCATTGCAGCTATCGAAAGCGACAATCTCGGCACAAGAGACGATCTCTATGGTACTGCATTACACTTCAAGATCCTCAGGCAGCATGGCTATAAAGTTTCACAAGATATATTTGGTAGATTCATGGATGAAAAGGACACATTAGAGAACCACCATTTCGCGCATTTGAAAGGAATGCTGGAACTTTTCGAGGCCTCAAACCTGGGTTTCGAAGGTGAAGATATTTTAGATGAGGCGAAAGCTTCCTTGACGCTAGCTCTCAGAGATAGTGGTCATATTTGTTATCCGGACAGTAACCTTTCCAGGGACGTAGTTCATTCCCTGGAGCTTCCATCACACCGCAGAGTGCAGTGGTTTGATGTCAAATGGCAAATCAACGCCTATGAAAAAGACATTTGTCGCGTCAACGCCACGTTACTCGGATTAGCAAAGCTTAATTTCAACATGGTTCAGGCCCAACTCCAAAAAGACTTAAGGGAAGCATCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

275

Amino Acids

31.75

Weight (kDa)

5.72

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	42 - 219	1.5e-41	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	296, 494, 735
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	1 cut(s)	673
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	4 cut(s)	50, 403, 502, 775
AjnI	CCWGG	3 cut(s)	534, 635, 654
AluBI	AGCT	7 cut(s)	190, 265, 344, 575, 590, 661, 766
AluI	AGCT	7 cut(s)	190, 265, 344, 575, 590, 661, 766
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	3 cut(s)	289, 525, 786
ApeKI	GCWGC	2 cut(s)	341, 415
ApoI	RAATTY	1 cut(s)	42
AseI	ATTAAT	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	137, 302
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	2 cut(s)	306, 543
AsuNHI	GCTAGC	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	353, 427
BccI	CCATC	2 cut(s)	164, 673
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	3 cut(s)	536, 637, 656
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	4 cut(s)	143, 287, 329, 587
BfrI	CTTAAG	1 cut(s)	805
BisI	GCNGC	2 cut(s)	342, 416
BlsI	GCNGC	2 cut(s)	343, 417
Bme1390I	CCNGG	3 cut(s)	536, 637, 656
BmgT120I	GGNCC	1 cut(s)	787
BmrFI	CCNGG	3 cut(s)	536, 637, 656
BmtI	GCTAGC	1 cut(s)	590
BoxI	GACNNNNGTC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpmI	CTGGAG	1 cut(s)	677
Bpu14I	TTCGAA	2 cut(s)	306, 543
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	535, 636, 654
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse21I	CCTNAGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	3 cut(s)	536, 637, 656
BseDI	CCNNGG	3 cut(s)	535, 636, 654
BseGI	GGATG	2 cut(s)	466, 815
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	186, 424, 607
BseXI	GCAGC	2 cut(s)	353, 427
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	3 cut(s)	296, 494, 735
BshFI	GGCC	3 cut(s)	291, 527, 788
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	291, 527, 788
Bsp119I	TTCGAA	2 cut(s)	306, 543
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	28, 101, 145, 376, 405
Bsp68I	TCGCGA	1 cut(s)	296
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	3 cut(s)	291, 527, 788
BspCNI	CTCAG	3 cut(s)	187, 423, 606
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	3 cut(s)	296, 494, 735
BspHI	TCATGA	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	2 cut(s)	306, 543
BspTI	CTTAAG	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	535, 636, 654
BssMI	GATC	5 cut(s)	28, 101, 145, 376, 405
Bst2UI	CCWGG	3 cut(s)	536, 637, 656
Bst4CI	ACNGT	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	805
BstBI	TTCGAA	2 cut(s)	306, 543
BstC8I	GCNNGC	2 cut(s)	24, 588
BstDEI	CTNAG	4 cut(s)	195, 255, 410, 593
BstF5I	GGATG	2 cut(s)	466, 815
BstFNI	CGCG	3 cut(s)	296, 494, 735
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	5 cut(s)	31, 104, 148, 379, 408
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	28, 101, 145, 376, 405
BstNI	CCWGG	3 cut(s)	536, 637, 656
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	534, 635, 654
BstUI	CGCG	3 cut(s)	296, 494, 735
BstV1I	GCAGC	2 cut(s)	353, 427
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	291, 527, 788
BtsCI	GGATG	2 cut(s)	466, 815
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	1 cut(s)	689
BtuMI	TCGCGA	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	24, 588
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	787
CseI	GACGC	3 cut(s)	265, 592, 724
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	6 cut(s)	23, 32, 71, 419, 457, 778
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	4 cut(s)	195, 255, 410, 593
DpnI	GATC	5 cut(s)	30, 103, 147, 378, 407
DpnII	GATC	5 cut(s)	28, 101, 145, 376, 405
Ecl136II	GAGCTC	1 cut(s)	265
Eco147I	AGGCCT	2 cut(s)	291, 527
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	534, 635, 654
EcoT38I	GRGCYC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	6 cut(s)	22, 31, 70, 418, 456, 777
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	342, 416
FokI	GGATG	2 cut(s)	473, 802
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	342, 416
FspBI	CTAG	4 cut(s)	143, 287, 329, 587
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	342, 416
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	291, 527, 788
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	3 cut(s)	265, 592, 724
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	2 cut(s)	573, 764
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	16, 739
Hpy188I	TCNGA	5 cut(s)	186, 196, 281, 596, 755
Hpy188III	TCNNGA	4 cut(s)	32, 295, 403, 620
Hpy8I	GTNNAC	2 cut(s)	16, 739
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	642, 746
HpyCH4V	TGCA	5 cut(s)	22, 107, 341, 392, 682
HpyF3I	CTNAG	4 cut(s)	195, 255, 410, 593
HpySE526I	ACGT	2 cut(s)	642, 746
Hsp92II	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 101, 145, 376, 405
LmnI	GCTCC	2 cut(s)	262, 658
Lsp1109I	GCAGC	2 cut(s)	353, 427
MaeI	CTAG	4 cut(s)	143, 287, 329, 587
MaeII	ACGT	2 cut(s)	642, 746
MaeIII	GTNAC	2 cut(s)	626, 747
MalI	GATC	5 cut(s)	30, 103, 147, 378, 407
MboI	GATC	5 cut(s)	28, 101, 145, 376, 405
MboII	GAAGA	4 cut(s)	38, 142, 221, 563
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	4 cut(s)	42, 109, 769, 820
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	88, 302, 419, 517, 538, 559
MroI	TCCGGA	1 cut(s)	619
MroXI	GAANNNNTTC	2 cut(s)	137, 302
MseI	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
MslI	CAYNNNNRTG	1 cut(s)	21
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	3 cut(s)	536, 637, 656
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	3 cut(s)	536, 637, 656
MvnI	CGCG	3 cut(s)	296, 494, 735
NdeII	GATC	5 cut(s)	28, 101, 145, 376, 405
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	6 cut(s)	26, 35, 74, 422, 460, 781
NmeAIII	GCCGAG	1 cut(s)	342
NruI	TCGCGA	1 cut(s)	296
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	2 cut(s)	306, 543
PaeI	GCATGC	1 cut(s)	26
PagI	TCATGA	1 cut(s)	31
PceI	AGGCCT	2 cut(s)	291, 527
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	2 cut(s)	137, 302
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	343, 417
PshAI	GACNNNNGTC	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	534, 635, 654
PspGI	CCWGG	3 cut(s)	534, 635, 654
PspPI	GGNCC	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	275
RruI	TCGCGA	1 cut(s)	296
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
SatI	GCNGC	2 cut(s)	342, 416
Sau3AI	GATC	5 cut(s)	28, 101, 145, 376, 405
Sau96I	GGNCC	1 cut(s)	787
ScrFI	CCNGG	3 cut(s)	536, 637, 656
SduI	GDGCHC	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	306, 543
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	42, 109, 769, 820
SseBI	AGGCCT	2 cut(s)	291, 527
SsiI	CCGC	1 cut(s)	673
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	4 cut(s)	143, 287, 329, 587
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	2 cut(s)	291, 527
StyD4I	CCNGG	3 cut(s)	534, 635, 654
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	645, 749
TaqI	TCGA	4 cut(s)	306, 348, 522, 543
TasI	AATT	4 cut(s)	42, 109, 769, 820
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
Tru9I	TTAA	6 cut(s)	90, 203, 216, 768, 806, 823
TscAI	CASTG	1 cut(s)	689
TseI	GCWGC	2 cut(s)	341, 415
TspDTI	ATGAA	6 cut(s)	74, 87, 445, 477, 638, 732
TspRI	CASTG	1 cut(s)	689
Tth111I	GACNNNGTC	1 cut(s)	275
Vha464I	CTTAAG	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	1 cut(s)	26
XmnI	GAANNNNTTC	2 cut(s)	137, 302
XspI	CTAG	4 cut(s)	143, 287, 329, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.