Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

2282170 .. 2284091

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTTATTGCACAGCTAGTGGGAACTGTTGTGGCTTCAAGTGTATACTTTGGCACAGCATGGTGGCTTCTCGAATCTATCGAGCATATCTGCGATACATCAAGTTTGCCAGAGGGAAGTCCGTGGACATGCCCGGGAGATGATGTGTTCTACCATGCTTCGATCATATGGGGGGTCATAGGCCCACTCCGAATGTTTACCAGCTATGGAGTCTACAAGGAGATGAACTGGTTCTTCCTCATCGGCCTCCTTGCACCCGTTCCAGTTTGGTTCCTCTCAAAGAAATTCCCCAACCACATGTGGATCAGGCTCATCAACATGCCCATAATCCTCGGTGCAACGGGCTCCATGCCGCCGGCTAAGGCCGTGCACTACATAACATGGTTTACAGTTGGTATTTTCTTCAGCTTCTATGTGCACAGAAGGCACAAGGGCTGGTGGGCTAGACATAACTATATTCTCTCTGCTTCTTTGGATGCTGGCCTTGCGTTCATGGGAGTTCTCATGTATTTCTCCCTTCAATCTCAGGGGATCAATGGGCCTCAATGGTGGGGTCTTGGAGGCAGTGACCAATGCCCGTTGGCCGAGTGTCCAACGGCGCCCGGGGTTGTTGCCAAAGGCTGCCCACTTTGTGGATGCCATAGCCCAGTTTCTTTTCTATCGTTGATGATGATAATCACGTTTCATCATGTACAGTTTGATTTGGTTTTAAACTACTTTAATTTCAGTTTAAGCTTAATCAAGGTTAATGAATCTGATTTCTCTGATTATTTAGGAACTCTAGAAAGTTACTTTAGGAGCTCCCTGAAAAAATTTATACCCCAATCACACTCTAGTTTAGAGATGAATGTATTAGTCACAACAGGCATGAATAGTTTCCCCACAAATTTGCTTGCTATATATGGATATGCATGCTATAAGAAACATCCATTTGTAGACAGCAATGTGTCATCAATATCATATAGAAGACATAATACTTGGGCATTTGGCAGGAATAGTAAGTTTCTGAAAAAATTGATAAATCATCTTACAAATTCAATCGTTAAACTTTATACTGTAACCCAATACAAAGATAAAGTTATACAGTTTGTTTACAAATCAAAACGAAATGCTAGAGAGAGAGAGAGAGAGAGAGAATTTGAGAAGCAGCTGCTAACTTTACCAAAAAAATTGAAAATGGTGGAATTTTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

399

Amino Acids

45.61

Weight (kDa)

9.29

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 172	1.7e-31	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccI	GTMKAC	3 cut(s)	45, 213, 936
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	311, 539
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	6 cut(s)	284, 812, 886, 1033, 1136, 1184
AcuI	CTGAAG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	599
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	39, 521, 1038, 1174
AluBI	AGCT	6 cut(s)	16, 204, 408, 735, 801, 1150
AluI	AGCT	6 cut(s)	16, 204, 408, 735, 801, 1150
Alw21I	GWGCWC	3 cut(s)	372, 420, 803
Alw44I	GTGCAC	2 cut(s)	368, 416
AlwI	GGATC	2 cut(s)	311, 539
Ama87I	CYCGRG	2 cut(s)	133, 602
AoxI	GGCC	6 cut(s)	181, 244, 363, 481, 539, 582
ApaLI	GTGCAC	2 cut(s)	368, 416
ApeKI	GCWGC	3 cut(s)	621, 1147, 1150
ApoI	RAATTY	6 cut(s)	284, 812, 886, 1033, 1136, 1184
Asp700I	GAANNNNTTC	2 cut(s)	230, 875
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	2 cut(s)	182, 539
AsuC2I	CCSGG	4 cut(s)	134, 135, 603, 604
AvaI	CYCGRG	2 cut(s)	133, 602
BaeGI	GKGCMC	2 cut(s)	372, 420
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	2 cut(s)	347, 803
BarI	GAAGNNNNNNTAC	2 cut(s)	958, 990
BbsI	GAAGAC	1 cut(s)	973
Bbv12I	GWGCWC	3 cut(s)	372, 420, 803
BbvI	GCAGC	3 cut(s)	608, 1137, 1159
BceAI	ACGGC	2 cut(s)	350, 612
BcnI	CCSGG	4 cut(s)	134, 135, 603, 604
BfaI	CTAG	5 cut(s)	17, 444, 782, 834, 1113
BfoI	RGCGCY	1 cut(s)	602
BisI	GCNGC	4 cut(s)	353, 622, 1148, 1151
BlsI	GCNGC	4 cut(s)	354, 623, 1149, 1152
Bme1390I	CCNGG	4 cut(s)	134, 135, 603, 604
BmeT110I	CYCGRG	2 cut(s)	133, 602
BmgT120I	GGNCC	2 cut(s)	182, 539
BmiI	GGNNCC	3 cut(s)	272, 346, 600
BmrFI	CCNGG	4 cut(s)	134, 135, 603, 604
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	466, 626
BmuI	ACTGGG	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	973
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	4 cut(s)	134, 135, 603, 604
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	599
BsaJI	CCNNGG	5 cut(s)	122, 133, 331, 602, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	233, 263, 647
Bse3DI	GCAATG	1 cut(s)	949
Bse8I	GATNNNNATC	1 cut(s)	674
BseDI	CCNNGG	5 cut(s)	122, 133, 331, 602, 603
BseGI	GGATG	3 cut(s)	481, 641, 925
BseJI	GATNNNNATC	1 cut(s)	674
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	3 cut(s)	233, 263, 647
BseSI	GKGCMC	2 cut(s)	372, 420
BseXI	GCAGC	3 cut(s)	608, 1137, 1159
BshFI	GGCC	6 cut(s)	183, 246, 365, 483, 541, 584
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	3 cut(s)	372, 420, 803
BsiHKCI	CYCGRG	2 cut(s)	133, 602
BsiSI	CCGG	3 cut(s)	134, 356, 603
BslI	CCNNNNNNNGG	1 cut(s)	632
BsnI	GGCC	6 cut(s)	183, 246, 365, 483, 541, 584
BsoBI	CYCGRG	2 cut(s)	133, 602
Bsp1286I	GDGCHC	4 cut(s)	347, 372, 420, 803
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	162, 303, 531
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	6 cut(s)	183, 246, 365, 483, 541, 584
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	272, 346, 600
BspPI	GGATC	2 cut(s)	311, 539
BspT107I	GGYRCC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	949
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	3 cut(s)	233, 263, 647
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	5 cut(s)	122, 133, 331, 602, 603
BssMI	GATC	3 cut(s)	162, 303, 531
BssNAI	GTATAC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	599
Bst1107I	GTATAC	1 cut(s)	46
Bst4CI	ACNGT	5 cut(s)	28, 391, 696, 1057, 1086
BstACI	GRCGYC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	691
BstC8I	GCNNGC	4 cut(s)	357, 481, 894, 913
BstDEI	CTNAG	2 cut(s)	360, 525
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	481, 641, 925
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	3 cut(s)	165, 306, 534
BstMBI	GATC	3 cut(s)	162, 303, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 485
BstNSI	RCATGY	4 cut(s)	132, 301, 322, 915
BstSCI	CCNGG	4 cut(s)	132, 133, 601, 602
BstSLI	GKGCMC	2 cut(s)	372, 420
BstV1I	GCAGC	3 cut(s)	608, 1137, 1159
BstV2I	GAAGAC	1 cut(s)	973
BstZ17I	GTATAC	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	183, 246, 365, 483, 541, 584
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	481, 641, 925
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	4 cut(s)	357, 481, 894, 913
CfoI	GCGC	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	182, 539
Cfr9I	CCCGGG	2 cut(s)	133, 602
Csp6I	GTAC	1 cut(s)	692
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	2 cut(s)	360, 525
DinI	GGCGCC	1 cut(s)	600
DpnI	GATC	3 cut(s)	164, 305, 533
DpnII	GATC	3 cut(s)	162, 303, 531
DraI	TTTAAA	1 cut(s)	711
DraIII	CACNNNGTG	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	801
Eco24I	GRGCYC	2 cut(s)	347, 803
Eco53kI	GAGCTC	1 cut(s)	801
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	2 cut(s)	133, 602
EcoICRI	GAGCTC	1 cut(s)	801
EcoT22I	ATGCAT	1 cut(s)	913
EcoT38I	GRGCYC	2 cut(s)	347, 803
EgeI	GGCGCC	1 cut(s)	600
EheI	GGCGCC	1 cut(s)	600
FauNDI	CATATG	2 cut(s)	167, 1193
FblI	GTMKAC	3 cut(s)	45, 213, 936
Fnu4HI	GCNGC	4 cut(s)	353, 622, 1148, 1151
FokI	GGATG	3 cut(s)	488, 648, 912
FriOI	GRGCYC	2 cut(s)	347, 803
Fsp4HI	GCNGC	4 cut(s)	353, 622, 1148, 1151
FspBI	CTAG	5 cut(s)	17, 444, 782, 834, 1113
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	4 cut(s)	353, 622, 1148, 1151
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	6 cut(s)	183, 246, 365, 483, 541, 584
HapII	CCGG	3 cut(s)	134, 356, 603
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	599
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	3 cut(s)	74, 210, 752
HpaII	CCGG	3 cut(s)	134, 356, 603
Hpy166II	GTNNAC	9 cut(s)	46, 126, 198, 214, 370, 387, 418, 937, 1093
Hpy188I	TCNGA	4 cut(s)	191, 757, 766, 1008
Hpy188III	TCNNGA	2 cut(s)	71, 782
Hpy8I	GTNNAC	9 cut(s)	46, 126, 198, 214, 370, 387, 418, 937, 1093
HpyAV	CCTTC	2 cut(s)	417, 527
HpyCH4III	ACNGT	5 cut(s)	28, 391, 696, 1057, 1086
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	6 cut(s)	11, 254, 338, 370, 418, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 485
HpyF3I	CTNAG	2 cut(s)	360, 525
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	1 cut(s)	599
HspAI	GCGC	1 cut(s)	599
KasI	GGCGCC	1 cut(s)	598
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	162, 303, 531
LmnI	GCTCC	3 cut(s)	350, 798, 806
Lsp1109I	GCAGC	3 cut(s)	608, 1137, 1159
LweI	GCATC	2 cut(s)	466, 626
MaeI	CTAG	5 cut(s)	17, 444, 782, 834, 1113
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	4 cut(s)	566, 788, 856, 1057
MalI	GATC	3 cut(s)	164, 305, 533
MboI	GATC	3 cut(s)	162, 303, 531
MboII	GAAGA	3 cut(s)	226, 394, 978
MhlI	GDGCHC	4 cut(s)	347, 372, 420, 803
MluCI	AATT	9 cut(s)	284, 721, 812, 886, 1013, 1033, 1136, 1169, 1184
Mly113I	GGCGCC	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	617
MnlI	CCTC	7 cut(s)	106, 248, 257, 284, 341, 552, 554
Mph1103I	ATGCAT	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	355
MroXI	GAANNNNTTC	2 cut(s)	230, 875
MseI	TTAA	6 cut(s)	710, 720, 731, 737, 747, 1044
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	1150
MspI	CCGG	3 cut(s)	134, 356, 603
MspR9I	CCNGG	4 cut(s)	134, 135, 603, 604
MwoI	GCNNNNNNNGC	2 cut(s)	424, 485
NaeI	GCCGGC	1 cut(s)	357
NarI	GGCGCC	1 cut(s)	599
NciI	CCSGG	4 cut(s)	134, 135, 603, 604
NdeI	CATATG	2 cut(s)	167, 1193
NdeII	GATC	3 cut(s)	162, 303, 531
NgoMIV	GCCGGC	1 cut(s)	355
NlaIV	GGNNCC	3 cut(s)	272, 346, 600
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	2 cut(s)	566, 856
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	4 cut(s)	132, 301, 322, 915
PaeI	GCATGC	1 cut(s)	915
PciI	ACATGT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	357
PdmI	GAANNNNTTC	2 cut(s)	230, 875
PfeI	GAWTC	2 cut(s)	74, 752
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	354, 623, 1149, 1152
PleI	GAGTC	1 cut(s)	218
PluTI	GGCGCC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	803
PspN4I	GGNNCC	3 cut(s)	272, 346, 600
PspPI	GGNCC	2 cut(s)	182, 539
PvuII	CAGCTG	1 cut(s)	1150
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	803
SaqAI	TTAA	6 cut(s)	710, 720, 731, 737, 747, 1044
SatI	GCNGC	4 cut(s)	353, 622, 1148, 1151
Sau3AI	GATC	3 cut(s)	162, 303, 531
Sau96I	GGNCC	2 cut(s)	182, 539
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	4 cut(s)	134, 135, 603, 604
SduI	GDGCHC	4 cut(s)	347, 372, 420, 803
SetI	ASST	8 cut(s)	18, 206, 410, 683, 737, 747, 803, 1152
SfaNI	GCATC	2 cut(s)	466, 626
SfoI	GGCGCC	1 cut(s)	600
SmaI	CCCGGG	2 cut(s)	135, 604
SmiMI	CAYNNNNRTG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	915
Sse9I	AATT	9 cut(s)	284, 721, 812, 886, 1013, 1033, 1136, 1169, 1184
SsiI	CCGC	1 cut(s)	353
SspDI	GGCGCC	1 cut(s)	598
SspMI	CTAG	5 cut(s)	17, 444, 782, 834, 1113
SstI	GAGCTC	1 cut(s)	803
StyD4I	CCNGG	4 cut(s)	132, 133, 601, 602
TaaI	ACNGT	5 cut(s)	28, 391, 696, 1057, 1086
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	3 cut(s)	72, 81, 161
TasI	AATT	9 cut(s)	284, 721, 812, 886, 1013, 1033, 1136, 1169, 1184
TatI	WGTACW	1 cut(s)	691
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	74, 752
Tru1I	TTAA	6 cut(s)	710, 720, 731, 737, 747, 1044
Tru9I	TTAA	6 cut(s)	710, 720, 731, 737, 747, 1044
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	2 cut(s)	566, 856
TseI	GCWGC	3 cut(s)	621, 1147, 1150
Tsp45I	GTSAC	2 cut(s)	566, 856
TspDTI	ATGAA	7 cut(s)	239, 481, 674, 765, 860, 884, 1180
TspGWI	ACGGA	1 cut(s)	111
TspMI	CCCGGG	2 cut(s)	133, 602
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	632
VneI	GTGCAC	2 cut(s)	368, 416
XapI	RAATTY	6 cut(s)	284, 812, 886, 1033, 1136, 1184
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	4 cut(s)	132, 301, 322, 915
XmaI	CCCGGG	2 cut(s)	133, 602
XmiI	GTMKAC	3 cut(s)	45, 213, 936
XmnI	GAANNNNTTC	2 cut(s)	230, 875
XspI	CTAG	5 cut(s)	17, 444, 782, 834, 1113
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.