Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

19451068 .. 19452382

Gene Structure 1315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCATCCATGGGAAGCTCCAAGCTCTTCATCGGAGGTGTTTCGTACCAGACAGATGACCAGAGTCTGAGGGAAGCTTTTCAAAAATATGGTGAAGTTGTAGACGCAAGAATCATCATGGACCGTGAAAGTGGTAGATCAAGAGGATTTGGATTCGTTACTTTCACTTCTAATGAGGAGGCAGCTAGTGCTCTCGAGGCCTTGGATGGGCAGGAGCTTCATGGCCGACGAGTAAGGGTGAACTATGCTACTGAAAGGCCTCGCCCCAGCTATAATAATTACGGTGATGGTCAAAATAGTTATGCACCTGGTGGTGGATTTAGTAACTATGCACCCGGTGGAGGTGACAGCTATGGAAGAGGAAACCCTGGATATGGTCCAGGAAGCTACAACAGTCCAGGAAGCTATAACAGTCCTAGCAATTATCCAAGTGCAAACACTTACGATGCTCCCAGTGGAAGTAGCAACAATTTTGGTGTTGGTAGTGGTGATAACTTCGGTGTTGGTGGTGACAACAGCTTTGGCACTCCTGATGCTCCATTTGGAGAGAACAAACCTGGCTTTGGCCTGGACGATCCATTGGAAGGAAATGATAGGGACGATAATGACGCGGGTGACTTCGCCAAGAGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

212

Amino Acids

22.22

Weight (kDa)

4.46

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 79	1.2e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	611
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	223
AdeI	CACNNNGTG	2 cut(s)	311, 338
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	198, 223, 257, 565, 630
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	121, 377, 630
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	7 cut(s)	104, 250, 296, 356, 500, 521, 626
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	121, 377
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	200, 281
BciT130I	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	186, 417
BglI	GCCNNNNNGGC	1 cut(s)	629
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
Bme18I	GGWCC	2 cut(s)	121, 377
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	121, 377, 630
BmrFI	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	436, 523
BmuI	ACTGGG	1 cut(s)	447
BoxI	GACNNNNGTC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	9, 201, 367
Bsc4I	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BseDI	CCNNGG	3 cut(s)	9, 201, 367
BseGI	GGATG	2 cut(s)	5, 211
BseLI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	6 cut(s)	207, 314, 341, 374, 563, 584
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	137, 574
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	611
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	9, 201, 367
BssMI	GATC	2 cut(s)	137, 574
BssT1I	CCWWGG	2 cut(s)	9, 201
Bst2UI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
Bst4CI	ACNGT	4 cut(s)	125, 284, 395, 413
Bst6I	CTCTTC	2 cut(s)	32, 352
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	5, 211
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	2 cut(s)	140, 577
BstMBI	GATC	2 cut(s)	137, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
BstNI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	7 cut(s)	307, 334, 367, 379, 397, 556, 567
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	5 cut(s)	200, 225, 259, 567, 632
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	5, 211
BtsIMutI	CAGTG	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	121, 377, 630
CseI	GACGC	2 cut(s)	113, 617
CsiI	ACCWGGT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	10, 118, 221
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	139, 576
DpnII	GATC	2 cut(s)	137, 574
DraIII	CACNNNGTG	2 cut(s)	311, 338
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	32, 352
EarI	CTCTTC	2 cut(s)	32, 352
Eco130I	CCWWGG	2 cut(s)	9, 201
Eco147I	AGGCCT	2 cut(s)	200, 259
Eco47I	GGWCC	2 cut(s)	121, 377
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
EcoT14I	CCWWGG	2 cut(s)	9, 201
ErhI	CCWWGG	2 cut(s)	9, 201
FaeI	CATG	3 cut(s)	13, 121, 224
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	9, 117, 220
FauI	CCCGC	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	186, 417
GluI	GCNGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	200, 225, 259, 567, 632
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	113, 617
Hin1II	CATG	3 cut(s)	13, 121, 224
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	64, 111, 153
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	7 cut(s)	104, 250, 296, 356, 500, 521, 626
Hpy166II	GTNNAC	2 cut(s)	103, 241
Hpy188I	TCNGA	2 cut(s)	35, 69
Hpy188III	TCNNGA	3 cut(s)	141, 194, 530
Hpy8I	GTNNAC	2 cut(s)	103, 241
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	4 cut(s)	125, 284, 395, 413
HpyCH4V	TGCA	3 cut(s)	305, 332, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	13, 121, 224
Kzo9I	GATC	2 cut(s)	137, 574
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	23, 214, 454, 541
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	2 cut(s)	436, 523
MabI	ACCWGGT	1 cut(s)	307
MaeI	CTAG	2 cut(s)	186, 417
MaeIII	GTNAC	5 cut(s)	157, 323, 344, 509, 614
MalI	GATC	2 cut(s)	139, 576
MboI	GATC	2 cut(s)	137, 574
MboII	GAAGA	2 cut(s)	19, 369
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	277, 421, 469
MlyI	GAGTC	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	78
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
MvaI	CCWGG	6 cut(s)	309, 369, 381, 399, 558, 569
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	3 cut(s)	188, 197, 629
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	137, 574
NlaIII	CATG	3 cut(s)	13, 121, 224
NmuCI	GTSAC	3 cut(s)	344, 509, 614
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	2 cut(s)	200, 259
PciSI	GCTCTTC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	111, 153
PfoI	TCCNGGA	2 cut(s)	379, 397
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	63
Psp6I	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	6 cut(s)	307, 367, 379, 397, 556, 567
PspPI	GGNCC	3 cut(s)	121, 377, 630
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	137, 574
Sau96I	GGNCC	3 cut(s)	121, 377, 630
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	7 cut(s)	309, 336, 369, 381, 399, 558, 569
SduI	GDGCHC	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	436, 523
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	121, 377
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	277, 421, 469
SseBI	AGGCCT	2 cut(s)	200, 259
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	2 cut(s)	186, 417
StuI	AGGCCT	2 cut(s)	200, 259
StyD4I	CCNGG	7 cut(s)	307, 334, 367, 379, 397, 556, 567
StyI	CCWWGG	2 cut(s)	9, 201
TaaI	ACNGT	4 cut(s)	125, 284, 395, 413
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	277, 421, 469
TfiI	GAWTC	2 cut(s)	111, 153
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	3 cut(s)	344, 509, 614
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	3 cut(s)	344, 509, 614
TspDTI	ATGAA	2 cut(s)	19, 209
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	121, 377
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	186, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.