Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Forward (+)

166579 .. 173728

Gene Structure 7150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGGCCGCGACTCGGTCCCTCTTGTGCTTGCTTACGTTGGTCGTCGGATTTCTAGTCGCCGACTCCAAGTTTATTGCATACAACACTTCCCAAGGCATAGTCCCAGGCAAAATCAATGTCCATTTGGTCCCTCACACCCACGACGACGTTGGCTGGTTAAAGACCGTTGATCAGTATTATGTTGGCTCCAACAATTCCATCCAGGGGGCTTGCGTGCAAAATGTGTTGGATTCTTTAGTTCCTGCTCTGCTGGCTGACAAGAATCGCAAATTCATTTATGTCGAACAGGCATTCTTCCAGCGGTGGTGGAGAGATCAGAGTGACGCCATCCAGAGTATAGTCAAGCAGCTAGTCACCTCGGGTCAATTAGAATTCATAAATGGGGGAATGTGTATGCATGATGAGGCTGCAACGCATTATATCGATATGATAGATCAGACGACTCTAGGGCATCGCTTTATTCAAAAGGAATTTGACGTGACTCCAAGAATTGGTTGGCAAATTGACCCCTTTGGGCATTCGGCAGTCCAGGCTTATTTGTTGGGAGCAGAAGCGGGATTCGACTCACTTTTCTTTGGTCGAATAGATTACCAGGATAGGGCTAAGCGCAAAAATGACAAGAGCCTTGAATTTATTTGGCAGGGTTCAAAGAGTCTTGGTTCATCTGCTCAGATTTTTTCTGGTGCATTCCCTGAGGCTTATGAACCTCCATCTGGTTTCTATTTTGAAGTTAATGATGATTCCCCAATTGTTCAGGATGACATCACTTTGTTTGATTACAATGTACATGATCGTGTTAATGACTTTGTTGCTACTGCAGTATCACAGGCTAACATAACTCGAACGAATCATATAATGTGGACCATGGGAACAGATTTCATGTATCAGTATGCACACACATGGTTCCGACAAATGGACAAGCTCATTCACTATGTCAACATGGATGGACGTGTTAATGCTCTGTATTCTACTCCATCCATATATACGGATGCAAAGTATGCTACAAATGAATCATGGCCAATCAAGACCGGTGATTTCTTTCCTTATGCAGATCGTACAAATGCCTACTGGACAGGGTACTTCACAAGTAGACCAGCCTTGAAACATTACGTTAGAACAATGAGTGGCTATTATTTGGCTGCGAGGCAACTAGAATTTTTTAAAGGAAGGACTGATTCAGGGCCCAACACAGACTCATTGGCAGATGCCTTGGCAATTGCTCAACATCATGATGCAGTCGCTGGTACAGAGAAGCAGCATGTTGCCAATGATTATGCAAAAAGATTGGCGATAGGTTACACAGAGGCCGAGCAAGTAGTTGCCACGTCACTTGCTCACTTGGTTGAGTCTGCATCATACACTGGATCTGTAAATCCAACTACGAAGTTTCAACAGTGCCCACTTCTGAATATCAGCTATTGCCCTGCATCAGAAGTGAATTTTTCTGAAGCAAAACAACTGACTGTCGTGGTGTACAATTCCCTAGGATGGAAGAGGGATGATGTAATTCGAATTCCTATTATCAATGAAGATGTCACTGTTCATGATTCTGAGGGAAGAGAAATTGAATCACAGCTTCTCCCACTAGATGATGCCCACGTGGGCTTAAGGAACTACTATGCTAAGGCATACTTGGGTCAAACTCCAACAAAGACACCAAATTATTGGCTTGCGTTTCCAGTGTCCGTGCCACCACTCGGTTTCAGCACATACACTATCTCGCTTTTGGGTAAAGGTGCTGGTTCCACCAAATCATCTGTACAGACATTTCAAAGTAGGGAAGAGTCCACTATTGAAGTTGGTCAAGGAAATGTGAAACTCACGTTTTCTACAAATCAAGGCAAAATGACTAACTATGTCAATAGAAGAAGCTTGGTTGAAGAATTGGTTGAACAGTCTTACAGTTTTTATAATGGATATAATGGCAGTGATGATAAAGCTCCTCTGATTCGTCAGAATGCCGGGGCATATATCTTCCGTCCAAATGGCACGTTTCTCATAAAACCTGGAGAAAAGGCTTCTCTGACTGTCGTGCGTGGACCAGTAATAGATGAAGTGCATCAACATATTAATGCATGGATATATCAGGTCACCAGAATTCACAAAGAGAAGGAGCATGTTGAAGTCGAGTTTATTGTTGGCCCATTGCCTACTGATGACGGAATTGGCAAAGAAGTTGTAACTCAACTAGCCACTACCATGGCTACCAACAAAACGTTCTACACTGATTCTAATGGGCGTGATTTTATTGAAAGGATTCGCGACTATAGAACAGATTGGGACCTGAAAGTGCACCAACCTATAGCTGGAAATTATTATCCAATTAATCTTGGGATATACATGCAAGATAACAGTACAGAATTTTCAGTTTTGGTGGATCGATCTTTGGGAGGGTCCAGCATGGTGGATGGACAGATAGAGCTGATGCTCCACAGGAGACTACTACTTGATGACTCAAGAGGTGTGGCAGAGGCTCTAAATGAAACCGTCTGTATTGACAATGTTTGCAGTGGACTAAGAATCCAAGGAAAATTTTATTTCAGAATCGACCCCCTGGGAGAAGGTGCCAAGTGGCGTCGTACTTTTGGTCAGGAGATATATTCCCCTCTTTTACTAGCCTTTTCTGAACAGGATGGAGATAACTGGAAGAATTCTCATGTAACCACTTTTTCAGGGGTTGGTTCATCGTACAGTTTACCTGATAACGTTGCTCTTATAACTCTTCAGGAGCTTGATGATGGAAAAGTTCTCCTTCGATTAGCACATTTATATGAGATTGGAGAGGACAGGGATCGATCTTTCTGTAATGGCAAATGTAGAGTTGAAGCAGCTCTTCCCCAGGAAGAAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

952

Amino Acids

107.06

Weight (kDa)

5.41

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 350	1.5e-82	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	355 - 447	3.1e-21	Alpha mannosidase middle domain
Laman-like_dom	PF21260	522 - 573	9.9e-11	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	601 - 820	4.5e-46	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1911, 2717
AccB1I	GGYRCC	1 cut(s)	2564
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	1090
AccII	CGCG	2 cut(s)	8, 2262
AciI	CCGC	3 cut(s)	6, 301, 554
AclI	AACGTT	2 cut(s)	2216, 2706
AclWI	GGATC	3 cut(s)	1372, 2385, 2799
AcoI	YGGCCR	2 cut(s)	3, 1016
AcuI	CTGAAG	2 cut(s)	1467, 2708
AcvI	CACGTG	1 cut(s)	1600
AcyI	GRCGYC	2 cut(s)	324, 2575
AfaI	GTAC	9 cut(s)	786, 1057, 1079, 1246, 1475, 1761, 2356, 2581, 2690
AfiI	CCNNNNNNNGG	9 cut(s)	12, 204, 491, 598, 713, 913, 1488, 1697, 2306
AflII	CTTAAG	1 cut(s)	1606
AflIII	ACRYGT	1 cut(s)	949
AgeI	ACCGGT	1 cut(s)	1028
AjiI	CACGTC	3 cut(s)	478, 950, 1326
AjnI	CCWGG	7 cut(s)	103, 201, 528, 591, 2005, 2553, 2838
AjuI	GAANNNNNNNTTGG	2 cut(s)	2201, 2233
Alw21I	GWGCWC	1 cut(s)	2295
Alw26I	GTCTC	1 cut(s)	2431
Alw44I	GTGCAC	1 cut(s)	2291
AlwI	GGATC	3 cut(s)	1372, 2385, 2799
AlwNI	CAGNNNCTG	1 cut(s)	1241
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	5 cut(s)	3, 1016, 1181, 1305, 2140
ApaI	GGGCCC	1 cut(s)	1185
ApaLI	GTGCAC	1 cut(s)	2291
ApeKI	GCWGC	5 cut(s)	346, 407, 1139, 1255, 2828
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AseI	ATTAAT	2 cut(s)	2070, 2325
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	1 cut(s)	2256
AspA2I	CCTAGG	1 cut(s)	1483
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	9 cut(s)	15, 127, 861, 1181, 1182, 2039, 2141, 2281, 2394
AsuC2I	CCSGG	1 cut(s)	1963
AsuHPI	GGTGA	3 cut(s)	346, 1043, 2083
AsuII	TTCGAA	1 cut(s)	1510
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	6 cut(s)	15, 127, 861, 2039, 2281, 2394
AvrII	CCTAGG	1 cut(s)	1483
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	3 cut(s)	1185, 1400, 2295
BaeI	ACNNNNGTAYC	2 cut(s)	804, 837
BalI	TGGCCA	1 cut(s)	1018
BanI	GGYRCC	1 cut(s)	2564
BanII	GRGCYC	1 cut(s)	1185
BbrPI	CACGTG	1 cut(s)	1600
Bbv12I	GWGCWC	1 cut(s)	2295
BbvI	GCAGC	5 cut(s)	358, 394, 1126, 1267, 2840
BccI	CCATC	9 cut(s)	206, 335, 718, 938, 982, 1482, 2402, 2627, 2732
BciT130I	CCWGG	7 cut(s)	105, 203, 530, 593, 2007, 2555, 2840
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	1963
BcoDI	GTCTC	1 cut(s)	2431
BfaI	CTAG	8 cut(s)	53, 350, 446, 1151, 1484, 1586, 2189, 2615
BfmI	CTRYAG	3 cut(s)	816, 2266, 2301
BfrI	CTTAAG	1 cut(s)	1606
BisI	GCNGC	6 cut(s)	6, 347, 408, 1140, 1256, 2829
BlnI	CCTAGG	1 cut(s)	1483
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	6 cut(s)	7, 348, 409, 1141, 1257, 2830
Bme1390I	CCNGG	8 cut(s)	105, 203, 530, 593, 1963, 2007, 2555, 2840
Bme18I	GGWCC	6 cut(s)	15, 127, 861, 2039, 2281, 2394
BmeT110I	CYCGRG	1 cut(s)	358
BmgBI	CACGTC	3 cut(s)	478, 950, 1326
BmgT120I	GGNCC	9 cut(s)	15, 127, 861, 1181, 1182, 2039, 2141, 2281, 2394
BmiI	GGNNCC	9 cut(s)	17, 129, 187, 905, 1183, 1744, 2282, 2395, 2566
BmrFI	CCNGG	8 cut(s)	105, 203, 530, 593, 1963, 2007, 2555, 2840
BmsI	GCATC	9 cut(s)	460, 979, 1195, 1222, 1361, 1436, 1582, 2068, 2415
BpmI	CTGGAG	1 cut(s)	2028
Bpu10I	CCTNAGC	1 cut(s)	1623
Bpu1102I	GCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	1510
BpuEI	CTTGAG	1 cut(s)	2440
BpuMI	CCSGG	1 cut(s)	1963
Bsa29I	ATCGAT	3 cut(s)	423, 2380, 2794
BsaAI	YACGTR	1 cut(s)	1600
BsaHI	GRCGYC	2 cut(s)	324, 2575
BsaWI	WCCGGW	1 cut(s)	1028
BsaXI	ACNNNNNCTCC	2 cut(s)	1563, 1593
Bsc4I	CCNNNNNNNGG	9 cut(s)	12, 204, 491, 598, 713, 913, 1488, 1697, 2306
Bse118I	RCCGGY	1 cut(s)	1028
Bse1I	ACTGG	5 cut(s)	1073, 1366, 1679, 2042, 2648
Bse21I	CCTNAGG	1 cut(s)	693
Bse3DI	GCAATG	1 cut(s)	2144
BseBI	CCWGG	7 cut(s)	105, 203, 530, 593, 2007, 2555, 2840
BseCI	ATCGAT	3 cut(s)	423, 2380, 2794
BseLI	CCNNNNNNNGG	9 cut(s)	12, 204, 491, 598, 713, 913, 1488, 1697, 2306
BseMI	GCAATG	1 cut(s)	2144
BseMII	CTCAG	3 cut(s)	683, 684, 1542
BseNI	ACTGG	5 cut(s)	1073, 1366, 1679, 2042, 2648
BseRI	GAGGAG	1 cut(s)	1932
BseSI	GKGCMC	3 cut(s)	1185, 1400, 2295
BseXI	GCAGC	5 cut(s)	358, 394, 1126, 1267, 2840
Bsh1236I	CGCG	2 cut(s)	8, 2262
BshFI	GGCC	5 cut(s)	5, 1018, 1183, 1307, 2142
BshNI	GGYRCC	1 cut(s)	2564
BshTI	ACCGGT	1 cut(s)	1028
BshVI	ATCGAT	3 cut(s)	423, 2380, 2794
BsiHKAI	GWGCWC	1 cut(s)	2295
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	1029, 1962
BslFI	GGGAC	3 cut(s)	86, 113, 2294
BslI	CCNNNNNNNGG	9 cut(s)	12, 204, 491, 598, 713, 913, 1488, 1697, 2306
BsmAI	GTCTC	1 cut(s)	2431
BsmFI	GGGAC	3 cut(s)	86, 113, 2294
BsmI	GAATGC	4 cut(s)	290, 517, 686, 1963
BsnI	GGCC	5 cut(s)	5, 1018, 1183, 1307, 2142
BsoBI	CYCGRG	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	1510
Bsp120I	GGGCCC	1 cut(s)	1181
Bsp1286I	GDGCHC	3 cut(s)	1185, 1400, 2295
Bsp1407I	TGTACA	3 cut(s)	784, 1473, 1759
Bsp1720I	GCTNAGC	1 cut(s)	603
Bsp19I	CCATGG	2 cut(s)	864, 2199
Bsp68I	TCGCGA	1 cut(s)	2262
BspACI	CCGC	3 cut(s)	6, 301, 554
BspANI	GGCC	5 cut(s)	5, 1018, 1183, 1307, 2142
BspCNI	CTCAG	3 cut(s)	682, 685, 1543
BspDI	ATCGAT	3 cut(s)	423, 2380, 2794
BspFNI	CGCG	2 cut(s)	8, 2262
BspHI	TCATGA	2 cut(s)	1228, 1543
BspLI	GGNNCC	9 cut(s)	17, 129, 187, 905, 1183, 1744, 2282, 2395, 2566
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	3 cut(s)	1372, 2385, 2799
BspQI	GCTCTTC	1 cut(s)	2838
BspT104I	TTCGAA	1 cut(s)	1510
BspT107I	GGYRCC	1 cut(s)	2564
BspTI	CTTAAG	1 cut(s)	1606
BsrDI	GCAATG	1 cut(s)	2144
BsrFI	RCCGGY	1 cut(s)	1028
BsrGI	TGTACA	3 cut(s)	784, 1473, 1759
BsrI	ACTGG	5 cut(s)	1073, 1366, 1679, 2042, 2648
BssAI	RCCGGY	1 cut(s)	1028
BssNI	GRCGYC	2 cut(s)	324, 2575
BssT1I	CCWWGG	6 cut(s)	91, 864, 1209, 1483, 2199, 2524
Bst2UI	CCWGG	7 cut(s)	105, 203, 530, 593, 2007, 2555, 2840
Bst6I	CTCTTC	5 cut(s)	1487, 1552, 1776, 2727, 2838
BstACI	GRCGYC	2 cut(s)	324, 2575
BstAFI	CTTAAG	1 cut(s)	1606
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstAUI	TGTACA	3 cut(s)	784, 1473, 1759
BstBAI	YACGTR	1 cut(s)	1600
BstBI	TTCGAA	1 cut(s)	1510
BstC8I	GCNNGC	5 cut(s)	29, 211, 215, 252, 1671
BstDEI	CTNAG	6 cut(s)	603, 669, 693, 1551, 1623, 2516
BstDSI	CCRYGG	2 cut(s)	864, 2199
BstEII	GGTNACC	1 cut(s)	2089
BstFNI	CGCG	2 cut(s)	8, 2262
BstHHI	GCGC	1 cut(s)	609
BstMAI	GTCTC	1 cut(s)	2431
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 530, 998
BstNI	CCWGG	7 cut(s)	105, 203, 530, 593, 2007, 2555, 2840
BstNSI	RCATGY	3 cut(s)	1262, 2120, 2344
BstPI	GGTNACC	1 cut(s)	2089
BstSCI	CCNGG	8 cut(s)	103, 201, 528, 591, 1961, 2005, 2553, 2838
BstSFI	CTRYAG	3 cut(s)	816, 2266, 2301
BstSLI	GKGCMC	3 cut(s)	1185, 1400, 2295
BstUI	CGCG	2 cut(s)	8, 2262
BstV1I	GCAGC	5 cut(s)	358, 394, 1126, 1267, 2840
BstX2I	RGATCY	1 cut(s)	1364
BstXI	CCANNNNNNTGG	3 cut(s)	1665, 2200, 2404
BstYI	RGATCY	1 cut(s)	1364
Bsu15I	ATCGAT	3 cut(s)	423, 2380, 2794
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	5 cut(s)	5, 1018, 1183, 1307, 2142
BsuTUI	ATCGAT	3 cut(s)	423, 2380, 2794
BtgI	CCRYGG	2 cut(s)	864, 2199
BtgZI	GCGATG	1 cut(s)	437
BtrI	CACGTC	3 cut(s)	478, 950, 1326
BtsI	GCAGTG	2 cut(s)	1933, 2515
BtsIMutI	CAGTG	7 cut(s)	1359, 1400, 1536, 1686, 1933, 2223, 2515
BtuMI	TCGCGA	1 cut(s)	2262
Cac8I	GCNNGC	5 cut(s)	29, 211, 215, 252, 1671
CaiI	CAGNNNCTG	1 cut(s)	1241
CciI	TCATGA	2 cut(s)	1228, 1543
CfoI	GCGC	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	1028
Cfr13I	GGNCC	9 cut(s)	15, 127, 861, 1181, 1182, 2039, 2141, 2281, 2394
ClaI	ATCGAT	3 cut(s)	423, 2380, 2794
CseI	GACGC	2 cut(s)	332, 2564
Csp6I	GTAC	9 cut(s)	785, 1056, 1078, 1245, 1474, 1760, 2355, 2580, 2689
CspAI	ACCGGT	1 cut(s)	1028
CspCI	CAANNNNNGTGG	4 cut(s)	1312, 1347, 2445, 2480
CviQI	GTAC	9 cut(s)	785, 1056, 1078, 1245, 1474, 1760, 2355, 2580, 2689
DdeI	CTNAG	6 cut(s)	603, 669, 693, 1551, 1623, 2516
DraI	TTTAAA	1 cut(s)	1162
EaeI	YGGCCR	2 cut(s)	3, 1016
Eam1104I	CTCTTC	5 cut(s)	1487, 1552, 1776, 2727, 2838
EarI	CTCTTC	5 cut(s)	1487, 1552, 1776, 2727, 2838
Eco130I	CCWWGG	6 cut(s)	91, 864, 1209, 1483, 2199, 2524
Eco24I	GRGCYC	1 cut(s)	1185
Eco47I	GGWCC	6 cut(s)	15, 127, 861, 2039, 2281, 2394
Eco57I	CTGAAG	2 cut(s)	1467, 2708
Eco72I	CACGTG	1 cut(s)	1600
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	358
Eco91I	GGTNACC	1 cut(s)	2089
EcoO109I	RGGNCCY	2 cut(s)	1181, 2281
EcoO65I	GGTNACC	1 cut(s)	2089
EcoRI	GAATTC	4 cut(s)	371, 1512, 2097, 2650
EcoRII	CCWGG	7 cut(s)	103, 201, 528, 591, 2005, 2553, 2838
EcoT14I	CCWWGG	6 cut(s)	91, 864, 1209, 1483, 2199, 2524
EcoT22I	ATGCAT	2 cut(s)	399, 2077
EcoT38I	GRGCYC	1 cut(s)	1185
ErhI	CCWWGG	6 cut(s)	91, 864, 1209, 1483, 2199, 2524
FalI	AAGNNNNNCTT	6 cut(s)	1616, 1648, 2736, 2768, 2817, 2849
FaqI	GGGAC	3 cut(s)	86, 113, 2294
FauI	CCCGC	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	1090
Fnu4HI	GCNGC	6 cut(s)	6, 347, 408, 1140, 1256, 2829
FriOI	GRGCYC	1 cut(s)	1185
Fsp4HI	GCNGC	6 cut(s)	6, 347, 408, 1140, 1256, 2829
FspBI	CTAG	8 cut(s)	53, 350, 446, 1151, 1484, 1586, 2189, 2615
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	6 cut(s)	6, 347, 408, 1140, 1256, 2829
GsuI	CTGGAG	1 cut(s)	2028
HaeIII	GGCC	5 cut(s)	5, 1018, 1183, 1307, 2142
HapII	CCGG	2 cut(s)	1029, 1962
HgaI	GACGC	2 cut(s)	332, 2564
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	2 cut(s)	324, 2575
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	1 cut(s)	1870
HpaII	CCGG	2 cut(s)	1029, 1962
HphI	GGTGA	3 cut(s)	346, 1043, 2083
Hpy166II	GTNNAC	9 cut(s)	861, 937, 1091, 1474, 1788, 2039, 2293, 2513, 2696
Hpy188III	TCNNGA	9 cut(s)	331, 755, 1024, 1229, 1544, 2261, 2457, 2591, 2726
Hpy8I	GTNNAC	9 cut(s)	861, 937, 1091, 1474, 1788, 2039, 2293, 2513, 2696
Hpy99I	CGWCG	4 cut(s)	47, 146, 149, 2580
HpyAV	CCTTC	4 cut(s)	1161, 2104, 2555, 2762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 530, 998
HpyF3I	CTNAG	6 cut(s)	603, 669, 693, 1551, 1623, 2516
Hsp92I	GRCGYC	2 cut(s)	324, 2575
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	2838
LmnI	GCTCC	6 cut(s)	191, 545, 1945, 2113, 2433, 2728
Lsp1109I	GCAGC	5 cut(s)	358, 394, 1126, 1267, 2840
LweI	GCATC	9 cut(s)	460, 979, 1195, 1222, 1361, 1436, 1582, 2068, 2415
MaeI	CTAG	8 cut(s)	53, 350, 446, 1151, 1484, 1586, 2189, 2615
MaeIII	GTNAC	9 cut(s)	320, 352, 478, 1295, 1326, 1534, 2089, 2179, 2659
MfeI	CAATTG	2 cut(s)	747, 1215
MflI	RGATCY	1 cut(s)	1364
MhlI	GDGCHC	3 cut(s)	1185, 1400, 2295
MlsI	TGGCCA	1 cut(s)	1018
MluNI	TGGCCA	1 cut(s)	1018
MmeI	TCCRAC	6 cut(s)	25, 207, 213, 931, 1400, 1670
Mox20I	TGGCCA	1 cut(s)	1018
Mph1103I	ATGCAT	2 cut(s)	399, 2077
MroXI	GAANNNNTTC	1 cut(s)	2256
MscI	TGGCCA	1 cut(s)	1018
MseI	TTAA	8 cut(s)	158, 732, 798, 954, 1161, 1607, 2070, 2325
MslI	CAYNNNNRTG	6 cut(s)	792, 898, 1230, 2070, 2198, 2769
Msp20I	TGGCCA	1 cut(s)	1018
MspA1I	CMGCKG	1 cut(s)	301
MspCI	CTTAAG	1 cut(s)	1606
MspI	CCGG	2 cut(s)	1029, 1962
MspR9I	CCNGG	8 cut(s)	105, 203, 530, 593, 1963, 2007, 2555, 2840
MunI	CAATTG	2 cut(s)	747, 1215
Mva1269I	GAATGC	4 cut(s)	290, 517, 686, 1963
MvaI	CCWGG	7 cut(s)	105, 203, 530, 593, 2007, 2555, 2840
MvnI	CGCG	2 cut(s)	8, 2262
MwoI	GCNNNNNNNGC	3 cut(s)	251, 530, 998
NciI	CCSGG	1 cut(s)	1963
NcoI	CCATGG	2 cut(s)	864, 2199
NlaIV	GGNNCC	9 cut(s)	17, 129, 187, 905, 1183, 1744, 2282, 2395, 2566
NmeAIII	GCCGAG	1 cut(s)	1333
NmuCI	GTSAC	6 cut(s)	320, 352, 478, 1326, 1534, 2089
NruI	TCGCGA	1 cut(s)	2262
NsiI	ATGCAT	2 cut(s)	399, 2077
NspI	RCATGY	3 cut(s)	1262, 2120, 2344
NspV	TTCGAA	1 cut(s)	1510
PagI	TCATGA	2 cut(s)	1228, 1543
PasI	CCCWGGG	1 cut(s)	2554
PciSI	GCTCTTC	1 cut(s)	2838
PctI	GAATGC	4 cut(s)	290, 517, 686, 1963
PdmI	GAANNNNTTC	1 cut(s)	2256
PflFI	GACNNNGTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	491
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	6 cut(s)	7, 348, 409, 1141, 1257, 2830
PmaCI	CACGTG	1 cut(s)	1600
PmlI	CACGTG	1 cut(s)	1600
Ppu21I	YACGTR	1 cut(s)	1600
PpuMI	RGGWCCY	1 cut(s)	2281
PshBI	ATTAAT	2 cut(s)	2070, 2325
PsiI	TTATAA	2 cut(s)	1911, 2717
Psp1406I	AACGTT	2 cut(s)	2216, 2706
Psp5II	RGGWCCY	1 cut(s)	2281
Psp6I	CCWGG	7 cut(s)	103, 201, 528, 591, 2005, 2553, 2838
PspCI	CACGTG	1 cut(s)	1600
PspEI	GGTNACC	1 cut(s)	2089
PspGI	CCWGG	7 cut(s)	103, 201, 528, 591, 2005, 2553, 2838
PspN4I	GGNNCC	9 cut(s)	17, 129, 187, 905, 1183, 1744, 2282, 2395, 2566
PspOMI	GGGCCC	1 cut(s)	1181
PspPI	GGNCC	9 cut(s)	15, 127, 861, 1181, 1182, 2039, 2141, 2281, 2394
PspPPI	RGGWCCY	1 cut(s)	2281
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	1 cut(s)	1241
PsuI	RGATCY	1 cut(s)	1364
PsyI	GACNNNGTC	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	2262
RsaI	GTAC	9 cut(s)	786, 1057, 1079, 1246, 1475, 1761, 2356, 2581, 2690
RsaNI	GTAC	9 cut(s)	785, 1056, 1078, 1245, 1474, 1760, 2355, 2580, 2689
RseI	CAYNNNNRTG	6 cut(s)	792, 898, 1230, 2070, 2198, 2769
SapI	GCTCTTC	1 cut(s)	2838
SaqAI	TTAA	8 cut(s)	158, 732, 798, 954, 1161, 1607, 2070, 2325
SatI	GCNGC	6 cut(s)	6, 347, 408, 1140, 1256, 2829
Sau96I	GGNCC	9 cut(s)	15, 127, 861, 1181, 1182, 2039, 2141, 2281, 2394
ScrFI	CCNGG	8 cut(s)	105, 203, 530, 593, 1963, 2007, 2555, 2840
SduI	GDGCHC	3 cut(s)	1185, 1400, 2295
SfaNI	GCATC	9 cut(s)	460, 979, 1195, 1222, 1361, 1436, 1582, 2068, 2415
SfcI	CTRYAG	3 cut(s)	816, 2266, 2301
SfuI	TTCGAA	1 cut(s)	1510
SinI	GGWCC	6 cut(s)	15, 127, 861, 2039, 2281, 2394
SmiMI	CAYNNNNRTG	6 cut(s)	792, 898, 1230, 2070, 2198, 2769
SmlI	CTYRAG	2 cut(s)	1606, 2455
SmoI	CTYRAG	2 cut(s)	1606, 2455
SsiI	CCGC	3 cut(s)	6, 301, 554
SspMI	CTAG	8 cut(s)	53, 350, 446, 1151, 1484, 1586, 2189, 2615
StyD4I	CCNGG	8 cut(s)	103, 201, 528, 591, 1961, 2005, 2553, 2838
StyI	CCWWGG	6 cut(s)	91, 864, 1209, 1483, 2199, 2524
TatI	WGTACW	4 cut(s)	784, 1473, 1759, 2354
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	8 cut(s)	158, 732, 798, 954, 1161, 1607, 2070, 2325
Tru9I	TTAA	8 cut(s)	158, 732, 798, 954, 1161, 1607, 2070, 2325
TscAI	CASTG	7 cut(s)	1366, 1400, 1543, 1686, 1933, 2230, 2515
TseFI	GTSAC	6 cut(s)	320, 352, 478, 1326, 1534, 2089
TseI	GCWGC	5 cut(s)	346, 407, 1139, 1255, 2828
Tsp45I	GTSAC	6 cut(s)	320, 352, 478, 1326, 1534, 2089
TspGWI	ACGGA	4 cut(s)	1001, 1675, 1967, 2175
TspRI	CASTG	7 cut(s)	1366, 1400, 1543, 1686, 1933, 2230, 2515
Tth111I	GACNNNGTC	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	1606
VneI	GTGCAC	1 cut(s)	2291
VpaK11BI	GGWCC	6 cut(s)	15, 127, 861, 2039, 2281, 2394
VspI	ATTAAT	2 cut(s)	2070, 2325
XceI	RCATGY	3 cut(s)	1262, 2120, 2344
XcmI	CCANNNNNNNNNTGG	3 cut(s)	146, 492, 2303
XmaJI	CCTAGG	1 cut(s)	1483
XmiI	GTMKAC	1 cut(s)	1090
XmnI	GAANNNNTTC	1 cut(s)	2256
XspI	CTAG	8 cut(s)	53, 350, 446, 1151, 1484, 1586, 2189, 2615
Zsp2I	ATGCAT	2 cut(s)	399, 2077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.