pycom17g02380

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001683
Physical Location & Seq
Reverse (-)
1526070 .. 1527118
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGACCATTACTTTAGACGACGTGTCAAACCTCTTAGGGGTTCCTATCACGGGCAAGGCAATCTCTTTACAAGCAGAAGATGTCATGAGTAATCATGAACTATTGGTAGAGTTATTAGGGGTTAATGACGAGGAGGCAACCGAGGCTTTGAGCGAGTTCAATGAAGAATATGTGACTCTTTCTTGGTTACGAAAACGTTTTGAAGGTGTGAGTGATACAGACTCAACGGAAGCAAGTAAGTGTCCAGCTAGGGCTTACTTGTTGTACTTGTTGGGATGTACTCTTTTTGTGGACAAAAGCGGGACCAGGGTACATGTTACTTATCTAAGACTACTTAGGGATCTTGATGCTGTAAGAGGCTATGCATGGGGTGCTAGTGCACCAAGTTGGTTATATCATCAGTTAGGGCAATCCACTAGATATAAGGTCAAACAAATGAGTGGCTATATGACCTTGTTAGAGACATGGGTGTACGAACACATGCATCTAGTTTGTAGCCCTAATTATGACCAAAATTACTCTGATATTCACCCTCATGCATGTCGTTGGAAGCCACGAACGTCTAGTGGAACCACGACACATGACTTGCAGAAGATGAGGAAAAAGTTGGATTCTTTGACAGCCAACCAGGTCAGCTGGGAACCCTACACATCTCATAGACAAGCACAACCATTTCATGAGATAACATACTTTACTGGGATGTTAAAATGCTTCGATGTTGTTGAGCCCTACTGTCCTGAGAGGGTACTTAGGCAGTTTGGACATGTCCAGACAATTCCAAAGGCACTGTGTGTCCTTCCTCGAAGCACAAAAGCAACTCATGCATCAGTTAACAAGGTATTATTTGAATACATTGATGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

289

Amino Acids

32.91

Weight (kDa)

6.3

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 271 1.2e-53 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AclI AACGTT 1 cut(s) 196
AclWI GGATC 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 791
AfaI GTAC 5 cut(s) 266, 280, 312, 473, 747
AfiI CCNNNNNNNGG 2 cut(s) 37, 50
AflIII ACRYGT 3 cut(s) 21, 313, 763
AgsI TTSAA 3 cut(s) 160, 203, 848
AhdI GACNNNNNGTC 1 cut(s) 22
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 305, 627
AluBI AGCT 2 cut(s) 248, 636
AluI AGCT 2 cut(s) 248, 636
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 455
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 1 cut(s) 348
ApaLI GTGCAC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 1 cut(s) 851
BciT130I CCWGG 2 cut(s) 307, 629
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 5 cut(s) 249, 375, 417, 488, 564
Bme1390I CCNGG 2 cut(s) 307, 629
Bme18I GGWCC 1 cut(s) 303
BmeRI GACNNNNNGTC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 4 cut(s) 42, 304, 571, 642
BmrFI CCNGG 2 cut(s) 307, 629
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 3 cut(s) 337, 493, 833
BmuI ACTGGG 1 cut(s) 705
BsaJI CCNNGG 2 cut(s) 141, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 50
Bse1I ACTGG 1 cut(s) 700
BseBI CCWGG 2 cut(s) 307, 629
BseDI CCNNGG 2 cut(s) 141, 306
BseGI GGATG 3 cut(s) 281, 705, 867
BseLI CCNNNNNNNGG 2 cut(s) 37, 50
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 382
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 37, 50
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 382, 729
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 730
BspHI TCATGA 3 cut(s) 84, 94, 676
BspLI GGNNCC 4 cut(s) 42, 304, 571, 642
BspPI GGATC 1 cut(s) 348
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 2 cut(s) 141, 306
BssMI GATC 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 307, 629
Bst4CI ACNGT 2 cut(s) 734, 789
BstAPI GCANNNNNTGC 2 cut(s) 371, 821
BstDEI CTNAG 5 cut(s) 34, 326, 335, 738, 749
BstF5I GGATG 3 cut(s) 281, 705, 867
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 3 cut(s) 143, 371, 821
BstNI CCWGG 2 cut(s) 307, 629
BstNSI RCATGY 4 cut(s) 317, 484, 543, 767
BstSCI CCNGG 2 cut(s) 305, 627
BstSLI GKGCMC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 281, 705, 867
BtsIMutI CAGTG 1 cut(s) 785
CciI TCATGA 3 cut(s) 84, 94, 676
Cfr13I GGNCC 1 cut(s) 303
CsiI ACCWGGT 1 cut(s) 627
Csp6I GTAC 5 cut(s) 265, 279, 311, 472, 746
CviQI GTAC 5 cut(s) 265, 279, 311, 472, 746
DdeI CTNAG 5 cut(s) 34, 326, 335, 738, 749
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DraIII CACNNNGTG 1 cut(s) 791
DriI GACNNNNNGTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 305, 627
EcoT22I ATGCAT 4 cut(s) 367, 486, 541, 826
EcoT38I GRGCYC 1 cut(s) 729
FaqI GGGAC 1 cut(s) 316
FauI CCCGC 1 cut(s) 293
FokI GGATG 2 cut(s) 288, 712
FriOI GRGCYC 1 cut(s) 729
FspBI CTAG 5 cut(s) 249, 375, 417, 488, 564
GsaI CCCAGC 1 cut(s) 640
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HinfI GANTC 3 cut(s) 175, 221, 611
HpaI GTTAAC 1 cut(s) 832
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 4 cut(s) 292, 380, 472, 832
Hpy188I TCNGA 1 cut(s) 523
Hpy188III TCNNGA 6 cut(s) 85, 95, 344, 677, 737, 769
Hpy8I GTNNAC 4 cut(s) 292, 380, 472, 832
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 197, 806
HpyCH4III ACNGT 2 cut(s) 734, 789
HpyCH4IV ACGT 3 cut(s) 21, 196, 560
HpyCH4V TGCA 6 cut(s) 365, 380, 484, 539, 589, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 371, 821
HpyF3I CTNAG 5 cut(s) 34, 326, 335, 738, 749
HpySE526I ACGT 3 cut(s) 21, 196, 560
KspAI GTTAAC 1 cut(s) 832
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 9 cut(s) 258, 292, 319, 614, 622, 641, 681, 750, 782
LweI GCATC 3 cut(s) 337, 493, 833
MabI ACCWGGT 1 cut(s) 627
MaeI CTAG 5 cut(s) 249, 375, 417, 488, 564
MaeII ACGT 3 cut(s) 21, 196, 560
MaeIII GTNAC 3 cut(s) 172, 186, 316
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 89, 176, 604
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 382, 729
MluCI AATT 3 cut(s) 502, 514, 774
MlyI GAGTC 2 cut(s) 169, 215
MmeI TCCRAC 2 cut(s) 527, 588
MnlI CCTC 9 cut(s) 41, 124, 127, 136, 350, 543, 591, 735, 810
Mph1103I ATGCAT 4 cut(s) 367, 486, 541, 826
MseI TTAA 3 cut(s) 123, 704, 831
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 307, 629
MvaI CCWGG 2 cut(s) 307, 629
MwoI GCNNNNNNNGC 3 cut(s) 143, 371, 821
NdeII GATC 1 cut(s) 340
NlaIV GGNNCC 4 cut(s) 42, 304, 571, 642
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 4 cut(s) 367, 486, 541, 826
NspI RCATGY 4 cut(s) 317, 484, 543, 767
PagI TCATGA 3 cut(s) 84, 94, 676
PciI ACATGT 2 cut(s) 313, 763
PfeI GAWTC 1 cut(s) 611
PleI GAGTC 2 cut(s) 169, 215
PpsI GAGTC 2 cut(s) 169, 215
PscI ACATGT 2 cut(s) 313, 763
Psp1406I AACGTT 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 305, 627
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 2 cut(s) 305, 627
PspN4I GGNNCC 4 cut(s) 42, 304, 571, 642
PspPI GGNCC 1 cut(s) 303
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 636
RsaI GTAC 5 cut(s) 266, 280, 312, 473, 747
RsaNI GTAC 5 cut(s) 265, 279, 311, 472, 746
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 3 cut(s) 123, 704, 831
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 2 cut(s) 169, 215
ScrFI CCNGG 2 cut(s) 307, 629
SduI GDGCHC 2 cut(s) 382, 729
SexAI ACCWGGT 1 cut(s) 627
SfaNI GCATC 3 cut(s) 337, 493, 833
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 534
Sse9I AATT 3 cut(s) 502, 514, 774
SsiI CCGC 1 cut(s) 300
SspMI CTAG 5 cut(s) 249, 375, 417, 488, 564
StyD4I CCNGG 2 cut(s) 305, 627
TaaI ACNGT 2 cut(s) 734, 789
TaiI ACGT 3 cut(s) 24, 199, 563
TaqI TCGA 2 cut(s) 714, 802
TasI AATT 3 cut(s) 502, 514, 774
TatI WGTACW 2 cut(s) 264, 278
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 123, 704, 831
Tru9I TTAA 3 cut(s) 123, 704, 831
TscAI CASTG 1 cut(s) 792
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 111, 177, 665
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 792
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 303
XceI RCATGY 4 cut(s) 317, 484, 543, 767
XspI CTAG 5 cut(s) 249, 375, 417, 488, 564
Zsp2I ATGCAT 4 cut(s) 367, 486, 541, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.