Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Reverse (-)

18612902 .. 18616657

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAATGAAGAGGAAGTGGAACCTCCACTTGGGGTTCTATTGGGTCGAAAGCGCGGGAAAACAAAGTCGGCCAAGAGAGCAAGCCAAGCAACACCGCACAGCACAGAGCCACTTCAAATCATCGAACCAGAGCCCGAGCCCGTCCCAATCGATGCGGAGCCAGTTGCAATTGAGCCGGAGAACTCAAGGAATGGCGCTAGGGGGGTTAGTGTTTCGATGTTCGATGACTCGGTGGAGAATCACTTCAGATTCATGCACACGATTTCCGAGCTCTGTGGCGACGCCGAAGGTGAGCCACTCCCGGAGAGCGACATTCAACGCTTATCGTCCTCCACCACTTTCCTGAGGGAATGGGCAGATTTTAAGTATGAACCTAGAGATGTTCGATTCGCTTGCGAAGCAGAAAGCTCTGATGGGGAGGATGTTGTCAGTAGCATAAACTTGCGGCAGTTTTCTTCCGCAACTGTTCCACAGAACGAGGCGGGGGACACATCTTCTCCAGAGTTGAGCCAAGACTATGTGATGTATGTTGGAGGGTCTGTTTGGGCATTGGATTGGTGTCCTAGAGTTCATGAAAGTCACGACCATCATGCAAAGTGCGAGTTTATTGCCATTGCTGCTCATCCCCCTGGATCTTCTTATCACAAGTTAGGTGAGCCACTTACTGGCAGAGGTGCCATTCAGATATGGTGTCTTCTAAATGCTAGTGTAAATGATGAAGGTGTTCCTATAGGAGACAAACCAAAAGGAGGAAATAAAAGGAATGGAGCCACAGAAAAATGCACTGAACAAAAAAGGGGAAGACCCAGAAAGAAGCCATTAGAAGAATCTGTTGGCAAAGAGGCCACAGAAGAAAAACTGTCCGAGTCAAAAAGGCCTAGAGGAAGACCTAGAAAGAAGCCAATAGAAGAATCTATTGACAAAGAGGCCAAAGAAGAGAAATCAACTCAACCAAAGAGGCCTAGAGGAAGACCTAGAAATAAATCAATAGAAGAATCTGTTGACAACTTGGATGGGAGAACCAATTGTGATGAGGTTCTTGCTATTGATTATCCAAAGGAATCATCTGAGAATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

359

Amino Acids

39.88

Weight (kDa)

5.35

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccII	CGCG	1 cut(s)	54
AciI	CCGC	6 cut(s)	54, 95, 155, 445, 459, 482
AclWI	GGATC	1 cut(s)	640
AcoI	YGGCCR	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	29, 665, 749
AgsI	TTSAA	2 cut(s)	116, 317
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 816, 848
AluBI	AGCT	2 cut(s)	271, 408
AluI	AGCT	2 cut(s)	271, 408
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	5 cut(s)	69, 843, 875, 927, 959
ApeKI	GCWGC	1 cut(s)	617
Asp700I	GAANNNNTTC	2 cut(s)	242, 723
AspLEI	GCGC	2 cut(s)	54, 197
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	302, 665
AvaI	CYCGRG	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	3 cut(s)	135, 141, 273
BbsI	GAAGAC	4 cut(s)	686, 808, 892, 976
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	3 cut(s)	407, 594, 1007
BcgI	CGANNNNNNTGC	6 cut(s)	375, 409, 572, 590, 606, 624
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	8 cut(s)	198, 375, 564, 705, 879, 891, 963, 975
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	2 cut(s)	446, 618
BlsI	GCNGC	2 cut(s)	447, 619
Bme1390I	CCNGG	2 cut(s)	302, 630
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	4 cut(s)	21, 159, 676, 769
BmrFI	CCNGG	2 cut(s)	302, 630
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	4 cut(s)	686, 808, 892, 976
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	4 cut(s)	481, 511, 525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 665, 749
Bse1I	ACTGG	2 cut(s)	161, 670
Bse21I	CCTNAGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	3 cut(s)	427, 622, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	29, 665, 749
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	335, 1059
BseNI	ACTGG	2 cut(s)	161, 670
BseXI	GCAGC	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	5 cut(s)	71, 845, 877, 929, 961
BshNI	GGYRCC	1 cut(s)	674
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	176, 302
BslFI	GGGAC	2 cut(s)	128, 500
BslI	CCNNNNNNNGG	3 cut(s)	29, 665, 749
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	2 cut(s)	128, 500
BsnI	GGCC	5 cut(s)	71, 845, 877, 929, 961
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	135, 141, 273
Bsp143I	GATC	1 cut(s)	632
BspACI	CCGC	6 cut(s)	54, 95, 155, 445, 459, 482
BspANI	GGCC	5 cut(s)	71, 845, 877, 929, 961
BspCNI	CTCAG	2 cut(s)	336, 1060
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	4 cut(s)	21, 159, 676, 769
BspPI	GGATC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	161, 670
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	1 cut(s)	632
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	466, 861
Bst6I	CTCTTC	2 cut(s)	3, 930
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	82, 394
BstDEI	CTNAG	2 cut(s)	344, 1068
BstF5I	GGATG	3 cut(s)	427, 622, 1018
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	54, 197
BstKTI	GATC	1 cut(s)	635
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	1 cut(s)	632
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 86, 398, 617
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	300, 628
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	4 cut(s)	686, 808, 892, 976
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
Bsu15I	ATCGAT	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	344
BsuRI	GGCC	5 cut(s)	71, 845, 877, 929, 961
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	427, 622, 1018
BtsIMutI	CAGTG	2 cut(s)	783, 1075
Cac8I	GCNNGC	2 cut(s)	82, 394
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	54, 197
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	290
CviAII	CATG	3 cut(s)	253, 572, 590
DdeI	CTNAG	2 cut(s)	344, 1068
DpnI	GATC	1 cut(s)	634
DpnII	GATC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	3, 930
EarI	CTCTTC	2 cut(s)	3, 930
Ecl136II	GAGCTC	1 cut(s)	271
Eco147I	AGGCCT	2 cut(s)	877, 961
Eco24I	GRGCYC	3 cut(s)	135, 141, 273
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	3 cut(s)	135, 141, 273
FaeI	CATG	3 cut(s)	256, 575, 593
FaiI	YATR	9 cut(s)	254, 369, 437, 519, 528, 573, 591, 688, 731
FaqI	GGGAC	2 cut(s)	128, 500
FatI	CATG	3 cut(s)	252, 571, 589
FauI	CCCGC	2 cut(s)	47, 475
Fnu4HI	GCNGC	2 cut(s)	446, 618
FokI	GGATG	3 cut(s)	434, 609, 1025
FriOI	GRGCYC	3 cut(s)	135, 141, 273
Fsp4HI	GCNGC	2 cut(s)	446, 618
FspBI	CTAG	8 cut(s)	198, 375, 564, 705, 879, 891, 963, 975
GlaI	GCGC	2 cut(s)	53, 196
GluI	GCNGC	2 cut(s)	446, 618
GsuI	CTGGAG	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	71, 845, 877, 929, 961
HapII	CCGG	2 cut(s)	176, 302
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	54, 197
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	256, 575, 593
Hin6I	GCGC	2 cut(s)	52, 195
HinP1I	GCGC	2 cut(s)	52, 195
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HpaII	CCGG	2 cut(s)	176, 302
HphI	GGTGA	2 cut(s)	302, 665
Hpy166II	GTNNAC	1 cut(s)	1003
Hpy188I	TCNGA	6 cut(s)	248, 268, 412, 684, 865, 1069
Hpy188III	TCNNGA	4 cut(s)	343, 500, 572, 581
Hpy8I	GTNNAC	1 cut(s)	1003
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	281, 713
HpyCH4III	ACNGT	2 cut(s)	466, 861
HpyCH4V	TGCA	4 cut(s)	167, 256, 593, 783
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 86, 398, 617
HpyF3I	CTNAG	2 cut(s)	344, 1068
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	256, 575, 593
HspAI	GCGC	2 cut(s)	52, 195
Kzo9I	GATC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	157, 767
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	8 cut(s)	198, 375, 564, 705, 879, 891, 963, 975
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	1 cut(s)	634
MboI	GATC	1 cut(s)	632
MfeI	CAATTG	2 cut(s)	168, 1024
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	3 cut(s)	135, 141, 273
MluCI	AATT	2 cut(s)	168, 1024
MlyI	GAGTC	2 cut(s)	221, 875
MmeI	TCCRAC	1 cut(s)	511
MroXI	GAANNNNTTC	2 cut(s)	242, 723
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	176, 302
MspR9I	CCNGG	2 cut(s)	302, 630
MunI	CAATTG	2 cut(s)	168, 1024
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	77, 86, 398, 617
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	632
NlaIII	CATG	3 cut(s)	256, 575, 593
NlaIV	GGNNCC	4 cut(s)	21, 159, 676, 769
NmuCI	GTSAC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	571
PceI	AGGCCT	2 cut(s)	877, 961
PdmI	GAANNNNTTC	2 cut(s)	242, 723
PfeI	GAWTC	8 cut(s)	238, 249, 387, 827, 911, 995, 1061, 1072
PflMI	CCANNNNNTGG	1 cut(s)	665
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	447, 619
PleI	GAGTC	2 cut(s)	221, 874
PpsI	GAGTC	2 cut(s)	221, 874
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	4 cut(s)	21, 159, 676, 769
PsuI	RGATCY	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	446, 618
Sau3AI	GATC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	221, 875
ScrFI	CCNGG	2 cut(s)	302, 630
SduI	GDGCHC	3 cut(s)	135, 141, 273
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	168, 1024
SseBI	AGGCCT	2 cut(s)	877, 961
SsiI	CCGC	6 cut(s)	54, 95, 155, 445, 459, 482
SspMI	CTAG	8 cut(s)	198, 375, 564, 705, 879, 891, 963, 975
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	2 cut(s)	877, 961
StyD4I	CCNGG	2 cut(s)	300, 628
TaaI	ACNGT	2 cut(s)	466, 861
TaqI	TCGA	6 cut(s)	46, 123, 150, 215, 222, 385
TasI	AATT	2 cut(s)	168, 1024
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	8 cut(s)	238, 249, 387, 827, 911, 995, 1061, 1072
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	7 cut(s)	17, 21, 241, 384, 560, 588, 732
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	1 cut(s)	665
XmnI	GAANNNNTTC	2 cut(s)	242, 723
XspI	CTAG	8 cut(s)	198, 375, 564, 705, 879, 891, 963, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.