RchiOBHm_Chr2g0107391

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002816
Physical Location & Seq
Forward (+)
18701508 .. 18702628
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGGCTAAGATTGTTCCTTCACTCTTCCTTCTCTCCCTCTTATTCACTTCTTCATTCTCAACCCTAACCGCACAAACCTGCTCAACCCTAACCGCACAAACCTGCTCAACCCACCAGTTCCCTAACCACAAAACCTTTGCAGCATGTAATGATCTACCAGTCCTAAAGTACTCCACTATTTACTGGAATTATTTCCCATCAAACGGAACAGTAGACCTTGCATTCAGAGAAACCCTATCCATATTTGATCTAACAGATATTAGATGGGCGGCGTGGGCGATAAACCCTAGTTCCAAGGGTATGGTGGGCTTGCAAGCCTTGGTCGCTTTTCAAAGAAGCGATGGAACTATGGCTGTTTATTCGTCGCCTATAAAAAGCTACGACACTCACTTGGAGCAAGGGAACCTCTCCTTTCCTGTCTACACCTTGTCCGCGGTTTACGAAAACAAAGAAATCACTATCTTTGCCACCCTTGGGCTCCCAAACAATGTTACAACTGTGAATCAACTATTGCAACAAGGACCTCTGCATGGTAACACACCAGGTATGCACTCGATGTCAGGCCCTAACCTTAAATCCTATGGCACCTTGGATTTTCTTTCCGGCAAAGTGGAAGCAACCGATACACATCACTCTGTGGTGTCCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

216

Amino Acids

23.59

Weight (kDa)

6.35

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 101 - 199 6.8e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 86, 110
AccB1I GGYRCC 1 cut(s) 584
AccI GTMKAC 2 cut(s) 213, 420
AccII CGCG 1 cut(s) 434
AciI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 203, 474, 530
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 521, 563
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 584
BanII GRGCYC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 152
BccI CCATC 3 cut(s) 205, 258, 335
BciT130I CCWGG 1 cut(s) 543
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 2 cut(s) 86, 110
BisI GCNGC 2 cut(s) 141, 270
BlsI GCNGC 2 cut(s) 142, 271
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 521, 563
BmiI GGNNCC 3 cut(s) 404, 479, 586
BmrFI CCNGG 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 474, 530
Bse1I ACTGG 3 cut(s) 115, 158, 188
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 3 cut(s) 203, 474, 530
BseNI ACTGG 3 cut(s) 115, 158, 188
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 584
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 3 cut(s) 203, 474, 530
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 151, 247
BspACI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
BspANI GGCC 1 cut(s) 564
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 3 cut(s) 404, 479, 586
BspMI ACCTGC 2 cut(s) 86, 110
BspT107I GGYRCC 1 cut(s) 584
BsrI ACTGG 3 cut(s) 115, 158, 188
BssECI CCNNGG 5 cut(s) 294, 318, 432, 472, 588
BssMI GATC 2 cut(s) 151, 247
BssT1I CCWWGG 4 cut(s) 294, 318, 472, 588
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 211, 499
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 311, 315
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 434
BstKTI GATC 2 cut(s) 154, 250
BstMBI GATC 2 cut(s) 151, 247
BstMWI GCNNNNNNNGC 2 cut(s) 275, 323
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 541
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 86, 110
Cac8I GCNNGC 2 cut(s) 311, 315
Cfr13I GGNCC 2 cut(s) 521, 563
Cfr42I CCGCGG 1 cut(s) 435
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 144, 530, 648
CviJI RGCY 7 cut(s) 5, 309, 317, 353, 378, 478, 564
CviKI_1 RGCY 7 cut(s) 5, 309, 317, 353, 378, 478, 564
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 153, 249
DpnII GATC 2 cut(s) 151, 247
DraIII CACNNNGTG 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 4 cut(s) 294, 318, 472, 588
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 521
EcoO109I RGGNCCY 2 cut(s) 521, 563
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 4 cut(s) 294, 318, 472, 588
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 4 cut(s) 294, 318, 472, 588
FaeI CATG 3 cut(s) 147, 533, 651
FaiI YATR 9 cut(s) 145, 242, 302, 350, 371, 531, 548, 582, 649
FatI CATG 3 cut(s) 143, 529, 647
FblI GTMKAC 2 cut(s) 213, 420
Fnu4HI GCNGC 2 cut(s) 141, 270
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 141, 270
FspBI CTAG 1 cut(s) 288
GluI GCNGC 2 cut(s) 141, 270
HaeIII GGCC 1 cut(s) 564
HapII CCGG 1 cut(s) 603
Hin1II CATG 3 cut(s) 147, 533, 651
HinfI GANTC 1 cut(s) 502
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 3 cut(s) 214, 421, 439
Hpy188I TCNGA 1 cut(s) 227
Hpy8I GTNNAC 3 cut(s) 214, 421, 439
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 27, 38
HpyCH4III ACNGT 2 cut(s) 211, 499
HpyCH4V TGCA 6 cut(s) 140, 221, 313, 514, 529, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 323
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 147, 533, 651
KspI CCGCGG 1 cut(s) 435
Kzo9I GATC 2 cut(s) 151, 247
LmnI GCTCC 2 cut(s) 394, 483
Lsp1109I GCAGC 1 cut(s) 152
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 490, 533
MalI GATC 2 cut(s) 153, 249
MboI GATC 2 cut(s) 151, 247
MboII GAAGA 2 cut(s) 16, 42
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 47, 416, 534
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 2 cut(s) 275, 323
NdeII GATC 2 cut(s) 151, 247
NlaIII CATG 3 cut(s) 147, 533, 651
NlaIV GGNNCC 3 cut(s) 404, 479, 586
NspI RCATGY 1 cut(s) 147
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 142, 271
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 404, 479, 586
PspPI GGNCC 2 cut(s) 521, 563
PspPPI RGGWCCY 1 cut(s) 521
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacII CCGCGG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 2 cut(s) 141, 270
Sau3AI GATC 2 cut(s) 151, 247
Sau96I GGNCC 2 cut(s) 521, 563
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 480
SexAI ACCWGGT 1 cut(s) 541
Sfr303I CCGCGG 1 cut(s) 435
SgrBI CCGCGG 1 cut(s) 435
SinI GGWCC 1 cut(s) 521
Sse9I AATT 1 cut(s) 187
SsiI CCGC 6 cut(s) 69, 93, 269, 432, 434, 645
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 4 cut(s) 294, 318, 472, 588
TaaI ACNGT 2 cut(s) 211, 499
TaqI TCGA 1 cut(s) 554
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
XmiI GTMKAC 2 cut(s) 213, 420
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.