RchiOBHm_Chr1g0363941

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
55238861 .. 55241712
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1071 bp
ATGAAATTTTCGTTCAGGTTGACAAGATTTCTTGAGCAGAGAGTGAATGAGATAGAGCAGTTTTACTCGAGCGCGAGTAAAAAGCAGGCGAATGCAAGTAAGAGTGGCTCAGCTGTGAAGGATAAAGAGAAGCATGTTCCCAGTATGAAGAAGCAGCAGCAAGAGGCTGCATTGAGGGAGGCAGCTGCCGCAAAGAGAATGCAAGAACTCATGCGCCAATTTGGCACCATATTGCGTCAAATTACACAACACAAGTGGGCATGGCCCTTTTTGCAACCTGTAGATGTAGAAGGTCTTGGTTTACATGATTATTATGAGGTCATTGACAAGCCAATGGATTTCAGTACAATTAAAAATCAAATGGAGGCCAAGGATGGTACTGGGTATAAAAACGTAAGGGAGATATGTGCTGATGTGCGGTTAGTTTTCAAAAATGCGATGCAGTATAATGAGGAGAGAAGTGATGTTCATGTTATGGCCAAAACTTTGATGGCAAAATTTGAGGAAAAGTGGCTGCAGCTTCTGCCTAAGGTTACTGAAGAGGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAATTAAATATGCAGCTTGCTGAAGAGGCTGCTCATGCTAAAATGGCTAGAGACTTAAGCAACGAGCTTTATGAGGTTGATATGCATTTGGAAGAGCTCCGAGATATGGTTGTTCAAAAGTGCAGAAAAATGTCAACTGAAGAGAAGAGAAAGCTTGGGGTAGCCCTCAGCAGACTGTCCCCAGAGGATCTCAGCACAGCACTAGAGATTGTTGCACAAAGTAATCCAGGTTTTCAAGCTACCGCTGAAGAGGTGGACCTTGATATCGATGCTCAGACTGAATCTACCTTGTGGAGGTTGAAGTTTTTTGTGAAGGACACTTTAGAAGTTCAGGCCAAGAGCTCAGCAAGCATGGGCGCCACCAACAATGACAACACTAACAACCATAACAGCGGTAACAAAAATAACATCAACAACGCTAACAATAAGCGAAAAAGGGAGATTTGTAATGCTATTGCCAAAACCAATAAAAAGAATAAAAAACCAGCTTCTTGA

Protein Analysis

356

Amino Acids

40.81

Weight (kDa)

7.68

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 76 - 161 2.1e-17 Bromodomain
BET PF17035 235 - 298 1.6e-18 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 932
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 189, 418, 819, 969
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 5, 497
AcuI CTGAAG 4 cut(s) 558, 618, 735, 843
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 2 cut(s) 346, 379
AfiI CCNNNNNNNGG 2 cut(s) 682, 870
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 4 cut(s) 430, 692, 812, 877
AjnI CCWGG 1 cut(s) 802
Alw21I GWGCWC 2 cut(s) 675, 920
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 1 cut(s) 771
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 4 cut(s) 263, 366, 477, 909
ApeKI GCWGC 9 cut(s) 154, 157, 167, 182, 185, 514, 517, 589, 605
ApoI RAATTY 2 cut(s) 5, 497
AspLEI GCGC 3 cut(s) 74, 216, 935
AspS9I GGNCC 2 cut(s) 264, 832
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 832
AxyI CCTNAGG 1 cut(s) 528
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 2 cut(s) 224, 932
BanII GRGCYC 2 cut(s) 675, 920
Bbv12I GWGCWC 2 cut(s) 675, 920
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 9 cut(s) 154, 166, 169, 172, 194, 501, 529, 592, 601
BccI CCATC 2 cut(s) 368, 484
BciT130I CCWGG 1 cut(s) 804
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 3 cut(s) 554, 624, 779
BfmI CTRYAG 2 cut(s) 279, 515
BfoI RGCGCY 1 cut(s) 936
BfrI CTTAAG 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 222
BlpI GCTNAGC 2 cut(s) 109, 919
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 832
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 264, 832
BmiI GGNNCC 2 cut(s) 226, 934
BmrFI CCNGG 1 cut(s) 804
BmrI ACTGGG 2 cut(s) 135, 390
BmsI GCATC 2 cut(s) 429, 835
BmuI ACTGGG 2 cut(s) 135, 390
Bpu10I CCTNAGC 1 cut(s) 743
Bpu1102I GCTNAGC 2 cut(s) 109, 919
BpuEI CTTGAG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 682, 870
Bse1I ACTGG 2 cut(s) 141, 385
Bse21I CCTNAGG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 804
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 682, 870
BseMII CTCAG 5 cut(s) 123, 757, 781, 863, 933
BseNI ACTGG 2 cut(s) 141, 385
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 9 cut(s) 154, 166, 169, 172, 194, 501, 529, 592, 601
BsgI GTGCAG 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 4 cut(s) 265, 368, 479, 911
BshNI GGYRCC 2 cut(s) 224, 932
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 675, 920
BsiHKCI CYCGRG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 2 cut(s) 682, 870
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 739
BsmI GAATGC 2 cut(s) 97, 204
BsnI GGCC 4 cut(s) 265, 368, 479, 911
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 675, 920
Bsp143I GATC 1 cut(s) 763
Bsp1720I GCTNAGC 2 cut(s) 109, 919
BspACI CCGC 4 cut(s) 189, 418, 819, 969
BspANI GGCC 4 cut(s) 265, 368, 479, 911
BspCNI CTCAG 5 cut(s) 122, 756, 780, 862, 932
BspDI ATCGAT 1 cut(s) 843
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 2 cut(s) 226, 934
BspMAI CTGCAG 1 cut(s) 519
BspPI GGATC 1 cut(s) 771
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 2 cut(s) 224, 932
BspTI CTTAAG 1 cut(s) 631
BsrI ACTGG 2 cut(s) 141, 385
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 763
BssNI GRCGYC 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 8 cut(s) 534, 552, 558, 594, 663, 711, 716, 819
BstACI GRCGYC 1 cut(s) 933
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 87, 594, 925
BstDEI CTNAG 6 cut(s) 109, 528, 743, 767, 849, 919
BstENI CCTNNNNNAGG 1 cut(s) 868
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 936
BstHHI GCGC 3 cut(s) 74, 216, 935
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 1 cut(s) 763
BstMWI GCNNNNNNNGC 8 cut(s) 188, 222, 271, 523, 602, 611, 620, 924
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 2 cut(s) 279, 515
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 9 cut(s) 154, 166, 169, 172, 194, 501, 529, 592, 601
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
Bsu15I ATCGAT 1 cut(s) 843
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 4 cut(s) 265, 368, 479, 911
BsuTUI ATCGAT 1 cut(s) 843
BtgZI GCGATG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 3 cut(s) 87, 594, 925
CaiI CAGNNNCTG 1 cut(s) 523
CfoI GCGC 3 cut(s) 74, 216, 935
Cfr13I GGNCC 2 cut(s) 264, 832
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 345, 378
CspCI CAANNNNNGTGG 2 cut(s) 236, 271
CviAII CATG 7 cut(s) 134, 211, 261, 305, 470, 611, 928
CviQI GTAC 2 cut(s) 345, 378
DdeI CTNAG 6 cut(s) 109, 528, 743, 767, 849, 919
DinI GGCGCC 1 cut(s) 934
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 8 cut(s) 534, 552, 558, 594, 663, 711, 716, 819
EarI CTCTTC 8 cut(s) 534, 552, 558, 594, 663, 711, 716, 819
Ecl136II GAGCTC 2 cut(s) 673, 918
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 675, 920
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 832
Eco53kI GAGCTC 2 cut(s) 673, 918
Eco57I CTGAAG 4 cut(s) 558, 618, 735, 843
Eco81I CCTNAGG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 2 cut(s) 673, 918
EcoNI CCTNNNNNAGG 1 cut(s) 868
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 663
EcoT38I GRGCYC 2 cut(s) 675, 920
EgeI GGCGCC 1 cut(s) 934
EheI GGCGCC 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 7 cut(s) 137, 214, 264, 308, 473, 614, 931
FaqI GGGAC 1 cut(s) 739
FatI CATG 7 cut(s) 133, 210, 260, 304, 469, 610, 927
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 2 cut(s) 675, 920
FspBI CTAG 3 cut(s) 554, 624, 779
GlaI GCGC 3 cut(s) 73, 215, 934
HaeII RGCGCY 1 cut(s) 936
HaeIII GGCC 4 cut(s) 265, 368, 479, 911
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 74, 216, 935
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 7 cut(s) 137, 214, 264, 308, 473, 614, 931
Hin6I GCGC 3 cut(s) 72, 214, 933
HinP1I GCGC 3 cut(s) 72, 214, 933
HincII GTYRAC 2 cut(s) 21, 711
HindII GTYRAC 2 cut(s) 21, 711
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 1 cut(s) 857
Hpy166II GTNNAC 4 cut(s) 21, 302, 711, 832
Hpy188I TCNGA 2 cut(s) 677, 852
Hpy188III TCNNGA 2 cut(s) 32, 1068
Hpy8I GTNNAC 4 cut(s) 21, 302, 711, 832
HpyAV CCTTC 3 cut(s) 112, 284, 883
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 222, 271, 523, 602, 611, 620, 924
HpyF3I CTNAG 6 cut(s) 109, 528, 743, 767, 849, 919
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 7 cut(s) 137, 214, 264, 308, 473, 614, 931
HspAI GCGC 3 cut(s) 72, 214, 933
KasI GGCGCC 1 cut(s) 932
Kzo9I GATC 1 cut(s) 763
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 1 cut(s) 678
LpnPI CCDG 8 cut(s) 71, 154, 291, 366, 771, 789, 816, 893
Lsp1109I GCAGC 9 cut(s) 154, 166, 169, 172, 194, 501, 529, 592, 601
LweI GCATC 2 cut(s) 429, 835
MaeI CTAG 3 cut(s) 554, 624, 779
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 532, 971
MalI GATC 1 cut(s) 765
MboI GATC 1 cut(s) 763
MboII GAAGA 9 cut(s) 160, 551, 569, 575, 611, 680, 728, 733, 836
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 2 cut(s) 675, 920
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 6 cut(s) 5, 218, 240, 348, 497, 578
MluNI TGGCCA 1 cut(s) 479
Mly113I GGCGCC 1 cut(s) 933
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 663
MscI TGGCCA 1 cut(s) 479
MseI TTAA 3 cut(s) 351, 581, 632
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 4 cut(s) 113, 185, 821, 969
MspCI CTTAAG 1 cut(s) 631
MspR9I CCNGG 1 cut(s) 804
Mva1269I GAATGC 2 cut(s) 97, 204
MvaI CCWGG 1 cut(s) 804
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 8 cut(s) 188, 222, 271, 523, 602, 611, 620, 924
NarI GGCGCC 1 cut(s) 933
NdeII GATC 1 cut(s) 763
NlaIII CATG 7 cut(s) 137, 214, 264, 308, 473, 614, 931
NlaIV GGNNCC 2 cut(s) 226, 934
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 1 cut(s) 137
PaeR7I CTCGAG 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 663
PctI GAATGC 2 cut(s) 97, 204
PfeI GAWTC 1 cut(s) 857
PluTI GGCGCC 1 cut(s) 936
Psp124BI GAGCTC 2 cut(s) 675, 920
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 2 cut(s) 226, 934
PspPI GGNCC 2 cut(s) 264, 832
PspXI VCTCGAGB 1 cut(s) 67
PstI CTGCAG 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 763
PvuII CAGCTG 2 cut(s) 113, 185
RsaI GTAC 2 cut(s) 346, 379
RsaNI GTAC 2 cut(s) 345, 378
SacI GAGCTC 2 cut(s) 675, 920
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 3 cut(s) 351, 581, 632
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 2 cut(s) 264, 832
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 675, 920
SfaNI GCATC 2 cut(s) 429, 835
SfcI CTRYAG 2 cut(s) 279, 515
SfoI GGCGCC 1 cut(s) 934
Sfr274I CTCGAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 832
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 3 cut(s) 32, 67, 631
SmoI CTYRAG 3 cut(s) 32, 67, 631
Sse9I AATT 6 cut(s) 5, 218, 240, 348, 497, 578
SsiI CCGC 4 cut(s) 189, 418, 819, 969
SspDI GGCGCC 1 cut(s) 932
SspMI CTAG 3 cut(s) 554, 624, 779
SstI GAGCTC 2 cut(s) 675, 920
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 753
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 68, 843
TasI AATT 6 cut(s) 5, 218, 240, 348, 497, 578
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 857
Tru1I TTAA 3 cut(s) 351, 581, 632
Tru9I TTAA 3 cut(s) 351, 581, 632
TseI GCWGC 9 cut(s) 154, 157, 167, 182, 185, 514, 517, 589, 605
TspDTI ATGAA 3 cut(s) 17, 161, 458
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 832
XagI CCTNNNNNAGG 1 cut(s) 868
XapI RAATTY 2 cut(s) 5, 497
XceI RCATGY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 67
XspI CTAG 3 cut(s) 554, 624, 779
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.