RchiOBHm_Chr1g0370501
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
60017335 .. 60017895
561 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 153 bp
ATGGAAGGAGGGCACCCTGCTGCTAGTAAGACAGAGTTCACAGAGTGTTGGAGAACAACATGGAAGACCCCTTACATTATGCGTCTCGCCCTCTCAGCTGGTATTGGAGGCCTCCTTTTCGGATACCATACAGGTGTGATTTCTGGGGCATAG

Protein Analysis

50

Amino Acids

5.37

Weight (kDa)

7.96

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 45
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 15
BanI GGYRCC 1 cut(s) 12
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 7
BciVI GTATCC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 116
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 71
BseMII CTCAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 15
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 71
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 111
CseI GACGC 1 cut(s) 71
CviAII CATG 1 cut(s) 60
CviJI RGCY 2 cut(s) 98, 111
CviKI_1 RGCY 2 cut(s) 98, 111
DdeI CTNAG 1 cut(s) 94
DraIII CACNNNGTG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 63
FaiI YATR 4 cut(s) 61, 80, 129, 151
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 111
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 1 cut(s) 63
LpnPI CCDG 4 cut(s) 30, 84, 117, 129
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 24
MboII GAAGA 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 3 cut(s) 101, 101, 122
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 14
PceI AGGCCT 1 cut(s) 111
PkrI GCNGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 1 cut(s) 21
SduI GDGCHC 1 cut(s) 15
SetI ASST 2 cut(s) 100, 136
SgeI CNNG 6 cut(s) 29, 36, 72, 98, 111, 144
SmiMI CAYNNNNRTG 1 cut(s) 132
SseBI AGGCCT 1 cut(s) 111
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 111
TseI GCWGC 1 cut(s) 20
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.