RchiOBHm_Chr2g0135871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002283
Physical Location & Seq
Forward (+)
53072153 .. 53075638
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50670

Sequence Viewer

Length: 255 bp
ATGACGGCAATTTGTAGGCAGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGAGCAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTTGCCAAAAGGAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAAGCCCCCACTCAGAGATCTGCAATCACTCCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.25

Weight (kDa)

9.57

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 158
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 130
Aor13HI TCCGGA 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 35, 93, 191
AsuHPI GGTGA 3 cut(s) 41, 46, 51
AvaII GGWCC 3 cut(s) 35, 93, 191
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 84, 137
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 130
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 3 cut(s) 35, 93, 191
BmgT120I GGNCC 3 cut(s) 35, 93, 191
BmiI GGNNCC 2 cut(s) 37, 215
BmrFI CCNGG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 95
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 95, 129
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 164, 243
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 165, 242
BspEI TCCGGA 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 37, 215
BsrDI GCAATG 1 cut(s) 29
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 173, 229
BstF5I GGATG 2 cut(s) 95, 129
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtsCI GGATG 2 cut(s) 95, 129
Cfr13I GGNCC 3 cut(s) 35, 93, 191
CviJI RGCY 3 cut(s) 207, 216, 222
CviKI_1 RGCY 3 cut(s) 207, 216, 222
DdeI CTNAG 2 cut(s) 173, 229
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco47I GGWCC 3 cut(s) 35, 93, 191
EcoRII CCWGG 1 cut(s) 179
FaiI YATR 2 cut(s) 84, 253
FaqI GGGAC 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 2 cut(s) 102, 116
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HapII CCGG 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 99, 175
HpaII CCGG 1 cut(s) 96
HphI GGTGA 3 cut(s) 41, 46, 51
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 96, 201
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 173, 229
Kpn2I TCCGGA 1 cut(s) 95
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 7 cut(s) 78, 109, 147, 166, 193, 207, 214
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 135
MflI RGATCY 1 cut(s) 234
MluCI AATT 2 cut(s) 9, 73
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 57, 62, 67, 152
MroI TCCGGA 1 cut(s) 95
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 1 cut(s) 234
NlaIV GGNNCC 2 cut(s) 37, 215
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 37, 215
PspPI GGNCC 3 cut(s) 35, 93, 191
PsuI RGATCY 1 cut(s) 234
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 3 cut(s) 35, 93, 191
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 181
SetI ASST 6 cut(s) 49, 54, 59, 185, 193, 209
SinI GGWCC 3 cut(s) 35, 93, 191
Sse9I AATT 2 cut(s) 9, 73
StyD4I CCNGG 1 cut(s) 179
TasI AATT 2 cut(s) 9, 73
TfiI GAWTC 1 cut(s) 99
TseI GCWGC 1 cut(s) 19
VpaK11BI GGWCC 3 cut(s) 35, 93, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.