Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

11349649 .. 11367589

Gene Structure 17941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTAATTGGATTTCCAGGTTGTGATCATCCTAAACCTGAGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCATAAGCTTTTGGAGCCAAAGCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGACAAGGTGAGATTTGTATGCTCAGAGCTGAGAGCTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

94

Amino Acids

10.34

Weight (kDa)

9.51

Isoelectric Point (pI)

79.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	16, 144
AluBI	AGCT	3 cut(s)	172, 269, 276
AluI	AGCT	3 cut(s)	172, 269, 276
Alw26I	GTCTC	2 cut(s)	84, 116
Aor13HI	TCCGGA	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	39
BccI	CCATC	2 cut(s)	38, 91
BciT130I	CCWGG	2 cut(s)	18, 146
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	84, 116
BfaI	CTAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	18, 146
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	18, 146
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	159
Bse21I	CCTNAGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	18, 146
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	28, 49, 83
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	5 cut(s)	30, 129, 206, 261, 277
BseNI	ACTGG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	84, 116
BsmFI	GGGAC	1 cut(s)	127
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	25, 197
BspCNI	CTCAG	5 cut(s)	31, 130, 205, 262, 276
BspEI	TCCGGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	25, 197
Bst2UI	CCWGG	2 cut(s)	18, 146
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	5 cut(s)	39, 138, 192, 263, 270
BstF5I	GGATG	3 cut(s)	28, 49, 83
BstKTI	GATC	2 cut(s)	28, 200
BstMAI	GTCTC	2 cut(s)	84, 116
BstMBI	GATC	2 cut(s)	25, 197
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	18, 146
BstSCI	CCNGG	2 cut(s)	16, 144
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	28, 49, 83
Cfr13I	GGNCC	1 cut(s)	47
CviJI	RGCY	5 cut(s)	172, 181, 187, 269, 276
CviKI_1	RGCY	5 cut(s)	172, 181, 187, 269, 276
DdeI	CTNAG	5 cut(s)	39, 138, 192, 263, 270
DpnI	GATC	2 cut(s)	27, 199
DpnII	GATC	2 cut(s)	25, 197
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	16, 144
FaiI	YATR	5 cut(s)	168, 216, 236, 260, 279
FaqI	GGGAC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	25
FokI	GGATG	3 cut(s)	15, 56, 70
FspBI	CTAG	1 cut(s)	108
HapII	CCGG	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	53, 140
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	195, 266
Hpy188III	TCNNGA	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	5 cut(s)	39, 138, 192, 263, 270
Kpn2I	TCCGGA	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 197
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	8 cut(s)	3, 30, 51, 63, 101, 131, 158, 172
MaeI	CTAG	1 cut(s)	108
MalI	GATC	2 cut(s)	27, 199
MboI	GATC	2 cut(s)	25, 197
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	3 cut(s)	6, 204, 219
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	34
MroI	TCCGGA	1 cut(s)	49
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	18, 146
MvaI	CCWGG	2 cut(s)	18, 146
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	25, 197
NlaIV	GGNNCC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	16, 144
PspGI	CCWGG	2 cut(s)	16, 144
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	25, 197
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	18, 146
SetI	ASST	7 cut(s)	22, 40, 150, 174, 250, 271, 278
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	3 cut(s)	6, 204, 219
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	16, 144
TasI	AATT	3 cut(s)	6, 204, 219
TfiI	GAWTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.