Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

6576832 .. 6580842

Gene Structure 4011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG040300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCAAATCGAGCGACCTCCCCTTGCCCTTGCATGCAATGATGTGGTGAACCTCCTCTCGATCATTCTAATTCAGTGCTCTCCAGAGAGCAATTTCGTCGATACACGGGATGGTCCGGAATCCCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTTGTTGCCAAAAGGAAAATGTTTGCTGTGTCCCTGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

9.24

Isoelectric Point (pI)

73.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	113, 222
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	113, 222
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	2 cut(s)	104, 157
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	113, 222
BmgT120I	GGNCC	2 cut(s)	113, 222
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	115, 149
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	115, 149
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 244
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	115, 149
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	113, 222
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	2 cut(s)	238, 247
CviKI_1	RGCY	2 cut(s)	238, 247
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	113, 222
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	36
FaiI	YATR	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	32
FokI	GGATG	2 cut(s)	122, 136
FspBI	CTAG	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	58, 83, 116, 232
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	4, 32, 36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 244
Hsp92II	CATG	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	7 cut(s)	96, 129, 167, 197, 224, 238, 245
MaeI	CTAG	1 cut(s)	174
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	69, 91, 250
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	27, 62, 65
MroI	TCCGGA	1 cut(s)	115
MseI	TTAA	1 cut(s)	253
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	10, 244
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	1 cut(s)	246
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	113, 222
SaqAI	TTAA	1 cut(s)	253
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	113, 222
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	4 cut(s)	19, 54, 224, 240
SinI	GGWCC	2 cut(s)	113, 222
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	69, 91, 250
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	3 cut(s)	9, 59, 99
TasI	AATT	3 cut(s)	69, 91, 250
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TscAI	CASTG	1 cut(s)	80
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	113, 222
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.