Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

20956294 .. 20964297

Gene Structure 8004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGGGATGAGGTTTACAGCTGGGTTGGCGGGCATCCTCTTCATCAAAACCATGAAAACTTGTCTGGTTTGGGCGTGTGGCAGCTCCTCCCTTGGGCTTCAGACGGGGTCAGAAGTGAATTACGAGTCGGACCAATTTGCGAATCCCTTGCATGCAATGATGTGGCGAACCTTTCGATCATTCTAATTCAGTGCTCTCTAGAGAGCAATTTCGTCAATACGGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAGGCCCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAGACAAGCTTATGAAGACACGAAGACGATTGGAGCTTCTTCTAGAGGATCTTCCTTGCGATTTTAATCTATCGGAGTACTATGACACATTAGATGAACTTATAGAACCATTGACGACATGCCATGACTCTCATTGTGCAGACACAAATCAATCATGTGGATCAGGGATCCTAGCTGATGGTCGGCTTGATGATTTGATCCAAAGAGTTGCTACCTTTGGGATGAAGAAGTTGCTACCCCAGGCTAATCTTGGCTTCCTCAACATAGGAAGTTGCCCCTCAAGAAGAAACTCTACTGGAATTGGACACCTTCGGGCAATTCCATGGGTGTTTGCATGGACTCAAACCAGATTTGTCTTCCAGCTCGGCTTACTTAGAAAAGTGATGATAATTTCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

239

Amino Acids

26.68

Weight (kDa)

6.3

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	87 - 181	1e-10	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	185 - 225	4.9e-13	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	5 cut(s)	372, 478, 484, 491, 508
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	7 cut(s)	21, 85, 248, 325, 352, 491, 679
AluI	AGCT	7 cut(s)	21, 85, 248, 325, 352, 491, 679
Alw21I	GWGCWC	1 cut(s)	197
AlwI	GGATC	5 cut(s)	372, 478, 484, 491, 508
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	131, 232, 262
AvaII	GGWCC	2 cut(s)	131, 232
BamHI	GGATCC	1 cut(s)	483
BarI	GAAGNNNNNNTAC	2 cut(s)	592, 624
BbsI	GAAGAC	3 cut(s)	338, 346, 664
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	488
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	3 cut(s)	200, 359, 488
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	2 cut(s)	131, 232
BmgT120I	GGNCC	3 cut(s)	131, 232, 262
BmiI	GGNNCC	3 cut(s)	256, 264, 485
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	3 cut(s)	338, 346, 664
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	92, 258, 555, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	235, 616
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	4 cut(s)	92, 258, 555, 638
BseGI	GGATG	3 cut(s)	13, 34, 543
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	235, 616
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	94
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	256, 264, 485
BspPI	GGATC	5 cut(s)	372, 478, 484, 491, 508
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	235, 616
BssECI	CCNNGG	4 cut(s)	92, 258, 555, 638
BssMI	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
BssT1I	CCWWGG	3 cut(s)	92, 258, 638
Bst2UI	CCWGG	1 cut(s)	557
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	32, 154
BstDEI	CTNAG	2 cut(s)	270, 689
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	3 cut(s)	13, 34, 543
BstKTI	GATC	6 cut(s)	180, 278, 367, 479, 486, 516
BstMBI	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 254
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	2 cut(s)	156, 438
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	3 cut(s)	338, 346, 664
BstX2I	RGATCY	3 cut(s)	275, 364, 483
BstYI	RGATCY	3 cut(s)	275, 364, 483
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	13, 34, 543
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	32, 154
Cfr13I	GGNCC	3 cut(s)	131, 232, 262
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	7 cut(s)	53, 153, 435, 440, 471, 639, 651
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	270, 689
DpnI	GATC	6 cut(s)	179, 277, 366, 478, 485, 515
DpnII	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	3 cut(s)	92, 258, 638
Eco47I	GGWCC	2 cut(s)	131, 232
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	3 cut(s)	92, 258, 638
ErhI	CCWWGG	3 cut(s)	92, 258, 638
FaeI	CATG	7 cut(s)	56, 156, 438, 443, 474, 642, 654
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	7 cut(s)	52, 152, 434, 439, 470, 638, 650
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	3 cut(s)	20, 21, 550
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	3 cut(s)	200, 359, 488
GluI	GCNGC	1 cut(s)	83
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	56, 156, 438, 443, 474, 642, 654
HindIII	AAGCTT	2 cut(s)	246, 323
HinfI	GANTC	4 cut(s)	126, 143, 443, 655
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	103, 113, 131, 273, 391
Hpy188III	TCNNGA	4 cut(s)	200, 242, 359, 597
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	223, 635
HpyCH4V	TGCA	5 cut(s)	152, 156, 281, 455, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 254
HpyF3I	CTNAG	2 cut(s)	270, 689
Hsp92II	CATG	7 cut(s)	56, 156, 438, 443, 474, 642, 654
Kzo9I	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
LmnI	GCTCC	3 cut(s)	90, 254, 349
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	3 cut(s)	200, 359, 488
MalI	GATC	6 cut(s)	179, 277, 366, 478, 485, 515
MboI	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
MboII	GAAGA	8 cut(s)	32, 343, 347, 351, 359, 553, 612, 664
MflI	RGATCY	3 cut(s)	275, 364, 483
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	9 cut(s)	119, 135, 186, 208, 282, 297, 615, 633, 705
MlyI	GAGTC	3 cut(s)	135, 437, 649
MmeI	TCCRAC	2 cut(s)	109, 206
MnlI	CCTC	6 cut(s)	4, 48, 98, 355, 584, 604
MseI	TTAA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	27, 254
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
NlaIII	CATG	7 cut(s)	56, 156, 438, 443, 474, 642, 654
NlaIV	GGNNCC	3 cut(s)	256, 264, 485
NmeAIII	GCCGAG	1 cut(s)	660
NspI	RCATGY	2 cut(s)	156, 438
PaeI	GCATGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	3 cut(s)	134, 437, 649
PpsI	GAGTC	3 cut(s)	134, 437, 649
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	256, 264, 485
PspPI	GGNCC	3 cut(s)	131, 232, 262
PsuI	RGATCY	3 cut(s)	275, 364, 483
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	6 cut(s)	177, 275, 364, 476, 483, 513
Sau96I	GGNCC	3 cut(s)	131, 232, 262
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	3 cut(s)	135, 437, 649
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	2 cut(s)	131, 232
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	156
Sse9I	AATT	9 cut(s)	119, 135, 186, 208, 282, 297, 615, 633, 705
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	3 cut(s)	200, 359, 488
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	3 cut(s)	92, 258, 638
TaqI	TCGA	1 cut(s)	176
TasI	AATT	9 cut(s)	119, 135, 186, 208, 282, 297, 615, 633, 705
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	32, 69, 344, 426, 554
TspRI	CASTG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	131, 232
XbaI	TCTAGA	2 cut(s)	199, 358
XceI	RCATGY	2 cut(s)	156, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	3 cut(s)	200, 359, 488
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.