RchiOBHm_Chr6g0302761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002283
Physical Location & Seq
Forward (+)
62769966 .. 62771233
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27197

Sequence Viewer

Length: 441 bp
ATGAAAACTTGTCTGGTTTGGGCGTTTGGCAGCTCCTCCCTTGGGCTTCAGACGGGGTCAGAAGTGAATTACGAATCAGACCAATTTGCGAATCGAGCGACCTTCCCATGCAATGATGTGGTGGTGATTGGTGAACCTCTCGAACACAATCAGGGGTGCCAGGCTTGGCTCAATAGTCATCCCACAAGCAGAAACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCTATTCAAGGATGCATGGAGATTTTGGTGACTGTCTATTTGATTTCTTGTCCCACTATTGCAAAACTTGAGAAATTTGTATACCTTTATTCTATTACCATTCAAATTTTGGCTCCCATTATTGGGGCTTCTGAGAAATCAAACATTGACTTGAGAGATGAAATGCAAGAATTTGAGTCTCCTTTTAGTAGAAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.31

Weight (kDa)

5.76

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 321
AcsI RAATTY 3 cut(s) 314, 345, 410
AcuI CTGAAG 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 42, 362, 363
AgsI TTSAA 2 cut(s) 248, 344
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 423
AlwNI CAGNNNCTG 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 3 cut(s) 314, 345, 410
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AsuHPI GGTGA 4 cut(s) 136, 143, 201, 280
BanI GGYRCC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 158, 354
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 329, 412
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 362, 363
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 178, 257
BseLI CCNNNNNNNGG 3 cut(s) 42, 362, 363
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 363
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 42, 362, 363
BsmAI GTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 158, 354
BspT107I GGYRCC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 40
BssNAI GTATAC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 197, 274
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 178, 257
BstMAI GTCTC 1 cut(s) 423
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 42
BstZ17I GTATAC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 178, 257
CaiI CAGNNNCTG 1 cut(s) 195
CviAII CATG 2 cut(s) 108, 256
CviJI RGCY 6 cut(s) 33, 46, 164, 169, 353, 368
CviKI_1 RGCY 6 cut(s) 33, 46, 164, 169, 353, 368
DdeI CTNAG 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 111, 259
FaiI YATR 4 cut(s) 109, 235, 257, 322
FaqI GGGAC 1 cut(s) 276
FatI CATG 2 cut(s) 107, 255
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 165, 264
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 111, 259
HinfI GANTC 4 cut(s) 74, 91, 201, 416
HphI GGTGA 4 cut(s) 136, 143, 201, 280
Hpy166II GTNNAC 2 cut(s) 134, 322
Hpy188I TCNGA 4 cut(s) 51, 61, 79, 373
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 134, 322
HpyAV CCTTC 2 cut(s) 112, 222
HpyCH4III ACNGT 2 cut(s) 197, 274
HpyCH4V TGCA 4 cut(s) 111, 255, 302, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 2 cut(s) 111, 259
LmnI GCTCC 2 cut(s) 38, 358
LpnPI CCDG 3 cut(s) 137, 146, 173
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 268
MluCI AATT 5 cut(s) 67, 83, 314, 345, 410
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 4 cut(s) 46, 147, 229, 250
Mph1103I ATGCAT 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 111, 259
NlaIV GGNNCC 2 cut(s) 158, 354
NmuCI GTSAC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 257
PfeI GAWTC 3 cut(s) 74, 91, 201
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 158, 354
PstNI CAGNNNCTG 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 31
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 161
SetI ASST 5 cut(s) 35, 104, 139, 214, 327
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 196
SmlI CTYRAG 2 cut(s) 308, 391
SmoI CTYRAG 2 cut(s) 308, 391
Sse9I AATT 5 cut(s) 67, 83, 314, 345, 410
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 197, 274
TaqI TCGA 2 cut(s) 94, 141
TasI AATT 5 cut(s) 67, 83, 314, 345, 410
TfiI GAWTC 3 cut(s) 74, 91, 201
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 17, 193, 414
Tth111I GACNNNGTC 1 cut(s) 55
XapI RAATTY 3 cut(s) 314, 345, 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.