Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

3700995 .. 3702273

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTCTGCCATTCTTCATCAGGCACCAATACTCCAAAATGCGGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCAAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCATAAGCTTTTGGAGCCAAAGCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGACAAGGTATGTTTATTTGCTTTGAATATGTCAAGCAAGTTGTTGTTAGCGGATACATAGCTAAGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

127

Amino Acids

13.91

Weight (kDa)

9.72

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	2 cut(s)	42, 360
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	241, 371, 376
AluI	AGCT	3 cut(s)	241, 371, 376
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	153, 185
Aor13HI	TCCGGA	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	58, 116
AsuHPI	GGTGA	3 cut(s)	64, 69, 74
AvaII	GGWCC	2 cut(s)	58, 116
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	2 cut(s)	107, 160
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	153, 185
BfuI	GTATCC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	58, 116
BmgT120I	GGNCC	2 cut(s)	58, 116
BmiI	GGNNCC	3 cut(s)	25, 60, 249
BmrFI	CCNGG	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	118, 152
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	198, 275
BseNI	ACTGG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	153, 185
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	266
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	2 cut(s)	42, 360
BspCNI	CTCAG	2 cut(s)	199, 274
BspEI	TCCGGA	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	25, 60, 249
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	207, 261, 372
BstF5I	GGATG	2 cut(s)	118, 152
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	153, 185
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	118, 152
Cfr13I	GGNCC	2 cut(s)	58, 116
CviJI	RGCY	5 cut(s)	241, 250, 256, 371, 376
CviKI_1	RGCY	5 cut(s)	241, 250, 256, 371, 376
DdeI	CTNAG	3 cut(s)	207, 261, 372
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	58, 116
EcoRII	CCWGG	1 cut(s)	213
FaiI	YATR	7 cut(s)	107, 237, 285, 305, 320, 339, 368
FaqI	GGGAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	125, 139
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HapII	CCGG	1 cut(s)	119
HindIII	AAGCTT	2 cut(s)	239, 374
HinfI	GANTC	2 cut(s)	122, 209
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	3 cut(s)	64, 69, 74
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	176, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	207, 261, 372
Kpn2I	TCCGGA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	6, 101, 132, 170, 200, 227, 241
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	6, 158
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	3 cut(s)	96, 273, 288
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	80, 85, 90
MroI	TCCGGA	1 cut(s)	118
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	266
NlaIV	GGNNCC	3 cut(s)	25, 60, 249
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	3 cut(s)	25, 60, 249
PspPI	GGNCC	2 cut(s)	58, 116
PsuI	RGATCY	1 cut(s)	266
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	2 cut(s)	58, 116
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	72, 77, 82, 219, 243, 319, 373, 378
SinI	GGWCC	2 cut(s)	58, 116
Sse9I	AATT	3 cut(s)	96, 273, 288
SsiI	CCGC	2 cut(s)	42, 360
StyD4I	CCNGG	1 cut(s)	213
TasI	AATT	3 cut(s)	96, 273, 288
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	6
VpaK11BI	GGWCC	2 cut(s)	58, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.