Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

38143461 .. 38145652

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCGAATCGAGCGACCTGCCCTTCCCCTTGCATGCAATGATGTGGTGGTGATTGGTGAACCTCTCGATCATTCTAATTCGGTGCTCTCCAGAGAGCAATTTCGTCGATACACGGGATGGTCCGGAATCCCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCACAAGGGTCCCTTGCAGAAGAAGATGTCAAAATGGCTTCATGTGCTGATGAAATATATATATTTATCTTTACCCAGTGGAGCTGCAATCTAAAAAGGTTATCTTCAAATGAAACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCTATTCAAGGATCCATGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

5.32

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccIII	TCCGGA	1 cut(s)	122
AclWI	GGATC	2 cut(s)	338, 351
AgsI	TTSAA	2 cut(s)	279, 340
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	338, 351
Aor13HI	TCCGGA	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	120, 180
AsuHPI	GGTGA	3 cut(s)	61, 68, 293
AvaII	GGWCC	2 cut(s)	120, 180
BamHI	GGATCC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	111, 164
BcgI	CGANNNNNNTGC	3 cut(s)	33, 86, 120
BcoDI	GTCTC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	120, 180
BmgT120I	GGNCC	2 cut(s)	120, 180
BmiI	GGNNCC	3 cut(s)	181, 182, 345
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	122, 156
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	67, 343
Bsp19I	CCATGG	1 cut(s)	347
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	181, 182, 345
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	338, 351
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	67, 343
BssT1I	CCWWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	122, 156
BstKTI	GATC	2 cut(s)	70, 346
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	67, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 215
BstNSI	RCATGY	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	122, 156
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	120, 180
CviAII	CATG	3 cut(s)	33, 213, 348
CviJI	RGCY	2 cut(s)	209, 255
CviKI_1	RGCY	2 cut(s)	209, 255
DpnI	GATC	2 cut(s)	69, 345
DpnII	GATC	2 cut(s)	67, 343
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	120, 180
EcoO109I	RGGNCCY	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	36, 216, 351
FaiI	YATR	7 cut(s)	34, 214, 229, 231, 233, 327, 349
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 259, 291
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	32, 212, 347
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	129, 143
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	73
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	36, 216, 351
HinfI	GANTC	3 cut(s)	6, 126, 293
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	61, 68, 293
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188III	TCNNGA	3 cut(s)	65, 90, 123
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	32, 314
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	32, 36, 188, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 215
Hsp92II	CATG	3 cut(s)	36, 216, 351
KflI	GGGWCCC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	67, 343
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	5 cut(s)	30, 103, 136, 174, 260
Lsp1109I	GCAGC	1 cut(s)	242
MalI	GATC	2 cut(s)	69, 345
MboI	GATC	2 cut(s)	67, 343
MboII	GAAGA	4 cut(s)	162, 203, 206, 267
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	76, 98
MnlI	CCTC	3 cut(s)	72, 321, 342
MroI	TCCGGA	1 cut(s)	122
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	10, 215
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	67, 343
NlaIII	CATG	3 cut(s)	36, 216, 351
NlaIV	GGNNCC	3 cut(s)	181, 182, 345
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	6, 126, 293
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	181, 182, 345
PspPI	GGNCC	2 cut(s)	120, 180
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	343
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	67, 343
Sau96I	GGNCC	2 cut(s)	120, 180
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	5 cut(s)	19, 64, 257, 272, 306
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	120, 180
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	76, 98
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	9, 66, 106
TasI	AATT	2 cut(s)	76, 98
TfiI	GAWTC	3 cut(s)	6, 126, 293
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	201, 237, 285, 297
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	120, 180
XceI	RCATGY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.