Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

45695299 .. 45731939

Gene Structure 36641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAAAGAGTATGAAATTGAAAGCGGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCATAAGCTTTTGGAGCCAAAGCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGACAAGGAAGTGAAGTTCCAAAGTGGTTCGATTGGCGTAAGGATGAAGTCTGTGTTCTTATGGGTGATTACACTAAGGATAATATATGGGAACTCTCGATTGAAATCCCTAGGGCTTTGAAATGGAAGAAAACAGGGCTTGTTGTTTGTGCTGTTTTTGAAGCTACGCAGGATTATTCTGGTGAATGCAGTTTTGGTCTCCACGCTACTATCAATGAAGTAGACATGGATGACTATAGTTTACGGTGTTACTTTGAAGCAACAGTGACAGTAACAGAGCCATCGGCTCATGTGTGGCTGAAATATATTCCACTGAATGTTGACATCAAGGAAGAGCATGGACAATCTCTTGAAGCTCATAAGGGAATAATGAATTGGACTTTTGTTGAAGGCTCTTCACAACATGGTTGGCTGCATCTTGAACTTGAGGATCATGAGGCTGCACATCTTGCCATCCTGGAGCCTGCCCACCTGATCAAAATCCAATTCAGTCCCATACCCAGTTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

267

Amino Acids

30.15

Weight (kDa)

5.72

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	513
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	729
AgsI	TTSAA	8 cut(s)	20, 395, 412, 452, 548, 644, 680, 713
AjnI	CCWGG	2 cut(s)	195, 747
AjuI	GAANNNNNNNTTGG	4 cut(s)	468, 500, 649, 681
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	223, 455, 647
AluI	AGCT	3 cut(s)	223, 455, 647
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	3 cut(s)	135, 167, 494
AlwI	GGATC	1 cut(s)	729
Aor13HI	TCCGGA	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	703, 731
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	40, 98
AsuHPI	GGTGA	5 cut(s)	46, 51, 56, 368, 485
AvaII	GGWCC	2 cut(s)	40, 98
AvrII	CCTAGG	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	690, 718
BccI	CCATC	4 cut(s)	89, 142, 580, 752
BciT130I	CCWGG	2 cut(s)	197, 749
BclI	TGATCA	1 cut(s)	765
BcoDI	GTCTC	3 cut(s)	135, 167, 494
BfaI	CTAG	2 cut(s)	159, 402
BfmI	CTRYAG	1 cut(s)	526
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	3 cut(s)	25, 704, 732
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	3 cut(s)	26, 705, 733
Bme1390I	CCNGG	2 cut(s)	197, 749
Bme18I	GGWCC	2 cut(s)	40, 98
BmgT120I	GGNCC	2 cut(s)	40, 98
BmiI	GGNNCC	3 cut(s)	42, 231, 753
BmrFI	CCNGG	2 cut(s)	197, 749
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	786
BpmI	CTGGAG	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	737
BsaBI	GATNNNNATC	2 cut(s)	395, 770
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	195, 401
BsaWI	WCCGGW	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	210, 792
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	2 cut(s)	395, 770
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	197, 749
BseDI	CCNNGG	2 cut(s)	195, 401
BseGI	GGATG	5 cut(s)	100, 134, 340, 526, 744
BseJI	GATNNNNATC	2 cut(s)	395, 770
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	180, 257
BseNI	ACTGG	2 cut(s)	210, 792
BseXI	GCAGC	2 cut(s)	690, 718
BsgI	GTGCAG	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	178, 768
BsmAI	GTCTC	3 cut(s)	135, 167, 494
BsmFI	GGGAC	2 cut(s)	178, 768
BsmI	GAATGC	1 cut(s)	482
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	248, 721, 765
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	181, 256
BspEI	TCCGGA	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	42, 231, 753
BspPI	GGATC	1 cut(s)	729
BspQI	GCTCTTC	2 cut(s)	618, 691
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	210, 792
BssECI	CCNNGG	2 cut(s)	195, 401
BssMI	GATC	3 cut(s)	248, 721, 765
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	197, 749
Bst4CI	ACNGT	3 cut(s)	537, 556, 562
Bst6I	CTCTTC	3 cut(s)	153, 618, 691
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	3 cut(s)	189, 243, 366
BstF5I	GGATG	5 cut(s)	100, 134, 340, 526, 744
BstKTI	GATC	3 cut(s)	251, 724, 768
BstMAI	GTCTC	3 cut(s)	135, 167, 494
BstMBI	GATC	3 cut(s)	248, 721, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 740
BstNI	CCWGG	2 cut(s)	197, 749
BstSCI	CCNGG	2 cut(s)	195, 747
BstSFI	CTRYAG	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	690, 718
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BtsCI	GGATG	5 cut(s)	100, 134, 340, 526, 744
BtsIMutI	CAGTG	2 cut(s)	561, 602
Cac8I	GCNNGC	1 cut(s)	756
CciI	TCATGA	1 cut(s)	724
Cfr13I	GGNCC	2 cut(s)	40, 98
CviAII	CATG	5 cut(s)	517, 581, 629, 695, 725
DdeI	CTNAG	3 cut(s)	189, 243, 366
DpnI	GATC	3 cut(s)	250, 723, 767
DpnII	GATC	3 cut(s)	248, 721, 765
Eam1104I	CTCTTC	3 cut(s)	153, 618, 691
EarI	CTCTTC	3 cut(s)	153, 618, 691
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	40, 98
EcoRII	CCWGG	2 cut(s)	195, 747
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	5 cut(s)	520, 584, 632, 698, 728
FaqI	GGGAC	2 cut(s)	178, 768
FatI	CATG	5 cut(s)	516, 580, 628, 694, 724
FbaI	TGATCA	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	25, 704, 732
FokI	GGATG	5 cut(s)	107, 121, 347, 533, 731
Fsp4HI	GCNGC	3 cut(s)	25, 704, 732
FspBI	CTAG	2 cut(s)	159, 402
GluI	GCNGC	3 cut(s)	25, 704, 732
GsuI	CTGGAG	1 cut(s)	770
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	5 cut(s)	520, 584, 632, 698, 728
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	104, 191
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	5 cut(s)	46, 51, 56, 368, 485
Hpy166II	GTNNAC	3 cut(s)	514, 533, 613
Hpy188I	TCNGA	2 cut(s)	246, 799
Hpy188III	TCNNGA	5 cut(s)	101, 388, 641, 710, 725
Hpy8I	GTNNAC	3 cut(s)	514, 533, 613
HpyAV	CCTTC	1 cut(s)	674
HpyCH4III	ACNGT	3 cut(s)	537, 556, 562
HpyCH4V	TGCA	4 cut(s)	254, 480, 706, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 740
HpyF3I	CTNAG	3 cut(s)	189, 243, 366
Hsp92II	CATG	5 cut(s)	520, 584, 632, 698, 728
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	3 cut(s)	248, 721, 765
LguI	GCTCTTC	2 cut(s)	618, 691
LmnI	GCTCC	2 cut(s)	229, 751
Lsp1109I	GCAGC	2 cut(s)	690, 718
LweI	GCATC	1 cut(s)	715
MaeI	CTAG	2 cut(s)	159, 402
MaeIII	GTNAC	3 cut(s)	539, 556, 562
MalI	GATC	3 cut(s)	250, 723, 767
MboI	GATC	3 cut(s)	248, 721, 765
MboII	GAAGA	4 cut(s)	140, 430, 635, 678
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	6 cut(s)	15, 78, 255, 270, 664, 776
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	62, 67, 72, 712, 721
MroI	TCCGGA	1 cut(s)	100
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	197, 749
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	2 cut(s)	197, 749
MwoI	GCNNNNNNNGC	2 cut(s)	229, 740
NdeII	GATC	3 cut(s)	248, 721, 765
NlaIII	CATG	5 cut(s)	520, 584, 632, 698, 728
NlaIV	GGNNCC	3 cut(s)	42, 231, 753
NmuCI	GTSAC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	724
PciSI	GCTCTTC	2 cut(s)	618, 691
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	747
PkrI	GCNGC	3 cut(s)	26, 705, 733
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	195, 747
PspGI	CCWGG	2 cut(s)	195, 747
PspN4I	GGNNCC	3 cut(s)	42, 231, 753
PspPI	GGNCC	2 cut(s)	40, 98
PsuI	RGATCY	1 cut(s)	248
SapI	GCTCTTC	2 cut(s)	618, 691
SatI	GCNGC	3 cut(s)	25, 704, 732
Sau3AI	GATC	3 cut(s)	248, 721, 765
Sau96I	GGNCC	2 cut(s)	40, 98
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	197, 749
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	8 cut(s)	54, 59, 64, 201, 225, 457, 649, 765
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	526
SinI	GGWCC	2 cut(s)	40, 98
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	6 cut(s)	15, 78, 255, 270, 664, 776
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	159, 402
StyD4I	CCNGG	2 cut(s)	195, 747
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	537, 556, 562
TaqI	TCGA	2 cut(s)	321, 389
TasI	AATT	6 cut(s)	15, 78, 255, 270, 664, 776
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	561, 609
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	703, 731
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	5 cut(s)	17, 27, 351, 522, 677
TspRI	CASTG	2 cut(s)	561, 609
VpaK11BI	GGWCC	2 cut(s)	40, 98
XmaJI	CCTAGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	2 cut(s)	159, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.