Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

33710301 .. 33716298

Gene Structure 5998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGAATCGAGCGACCTCCCCTTCCCCTTGCATGCAATGATGCGGTGAACCTCCTCTCGATCATTCTGATTCAGTGCTCTCCAGAGAGCAATTTCGTTGATACACGGGATGGTCCGGAATCCCCCAAATCTCCAATAGAGAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTGTCTTATTGCCAAAAGGAAAATGTTTGTTGTGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGAAGCCAAAGCCACCCCCCCTCCTCAGAGATCTGCAATTACTCCTTATAGAATTATTCTTGGTAATATAAAAGACAAGCAATCATGTGGATCAGGGATCCTAGCTGATGGTGGGCTTGACGATTTGATCAGAAGAGTTACTACCTTTGGGATCGTATTAATGAAAGCTCGACTTGGGTCAGGTGTGCTTTTATTTTATTGTAGAAGACGTTGCTACCCCAGGCTGAGCTTGGCTTCCTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

9.13

Isoelectric Point (pI)

68.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	4 cut(s)	337, 343, 350, 404
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	214, 464
AluBI	AGCT	4 cut(s)	242, 350, 413, 474
AluI	AGCT	4 cut(s)	242, 350, 413, 474
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	4 cut(s)	337, 343, 350, 404
Aor13HI	TCCGGA	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	113, 226
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	113, 226
BamHI	GGATCC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbsI	GAAGAC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	80
BccI	CCATC	3 cut(s)	104, 157, 347
BciT130I	CCWGG	2 cut(s)	216, 466
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	174, 347
BglII	AGATCT	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	216, 466
Bme18I	GGWCC	2 cut(s)	113, 226
BmgT120I	GGNCC	2 cut(s)	113, 226
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	216, 466
BmsI	GCATC	1 cut(s)	31
BoxI	GACNNNNGTC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	457
BpmI	CTGGAG	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	214, 464
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	216, 466
BseDI	CCNNGG	2 cut(s)	214, 464
BseGI	GGATG	2 cut(s)	115, 149
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	284, 461
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	44, 258
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	283, 462
BspEI	TCCGGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	4 cut(s)	337, 343, 350, 404
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	214, 464
BssMI	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
Bst2UI	CCWGG	2 cut(s)	216, 466
Bst6I	CTCTTC	2 cut(s)	168, 373
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	270, 470
BstF5I	GGATG	2 cut(s)	115, 149
BstKTI	GATC	6 cut(s)	63, 278, 338, 345, 375, 399
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 248
BstNI	CCWGG	2 cut(s)	216, 466
BstNSI	RCATGY	1 cut(s)	36
BstPAI	GACNNNNGTC	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	214, 464
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	275, 342
BstYI	RGATCY	2 cut(s)	275, 342
BtsCI	GGATG	2 cut(s)	115, 149
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	113, 226
CviAII	CATG	2 cut(s)	33, 330
CviJI	RGCY	9 cut(s)	242, 251, 257, 350, 361, 413, 469, 474, 479
CviKI_1	RGCY	9 cut(s)	242, 251, 257, 350, 361, 413, 469, 474, 479
DdeI	CTNAG	2 cut(s)	270, 470
DpnI	GATC	6 cut(s)	62, 277, 337, 344, 374, 398
DpnII	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
Eam1104I	CTCTTC	2 cut(s)	168, 373
EarI	CTCTTC	2 cut(s)	168, 373
Eco47I	GGWCC	2 cut(s)	113, 226
EcoRII	CCWGG	2 cut(s)	214, 464
FaeI	CATG	2 cut(s)	36, 333
FaiI	YATR	5 cut(s)	34, 294, 314, 331, 490
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	32, 329
FbaI	TGATCA	1 cut(s)	372
FokI	GGATG	2 cut(s)	122, 136
FspBI	CTAG	2 cut(s)	174, 347
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	36, 333
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	3 cut(s)	6, 70, 119
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	69, 273, 377
Hpy188III	TCNNGA	4 cut(s)	58, 83, 116, 236
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	32, 217
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	32, 36, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 248
HpyF3I	CTNAG	2 cut(s)	270, 470
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	2 cut(s)	36, 333
Kpn2I	TCCGGA	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	174, 347
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	6 cut(s)	62, 277, 337, 344, 374, 398
MboI	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
MboII	GAAGA	3 cut(s)	155, 390, 462
MflI	RGATCY	2 cut(s)	275, 342
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	3 cut(s)	91, 282, 297
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	27, 62, 65, 276, 279
MroI	TCCGGA	1 cut(s)	115
MseI	TTAA	1 cut(s)	404
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	216, 466
MvaI	CCWGG	2 cut(s)	216, 466
MwoI	GCNNNNNNNGC	2 cut(s)	10, 248
NdeII	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
NlaIII	CATG	2 cut(s)	36, 333
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	6, 70, 119
PshAI	GACNNNNGTC	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	214, 464
PspGI	CCWGG	2 cut(s)	214, 464
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	113, 226
PsuI	RGATCY	2 cut(s)	275, 342
SaqAI	TTAA	1 cut(s)	404
Sau3AI	GATC	6 cut(s)	60, 275, 335, 342, 372, 396
Sau96I	GGNCC	2 cut(s)	113, 226
ScrFI	CCNGG	2 cut(s)	216, 466
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	113, 226
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	91, 282, 297
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	174, 347
StyD4I	CCNGG	2 cut(s)	214, 464
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	3 cut(s)	9, 59, 415
TasI	AATT	3 cut(s)	91, 282, 297
TfiI	GAWTC	3 cut(s)	6, 70, 119
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	113, 226
VspI	ATTAAT	1 cut(s)	404
XceI	RCATGY	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	2 cut(s)	174, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.