Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

50880475 .. 50887851

Gene Structure 7377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG246800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGGAGGGGCGGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCATAAGCTTTTGGAGCCAAAGCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGACAAGATGTATACACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

100

Amino Acids

11.05

Weight (kDa)

10.27

Isoelectric Point (pI)

75.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	123, 155
Aor13HI	TCCGGA	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	28, 86
AsuHPI	GGTGA	3 cut(s)	34, 39, 44
AvaII	GGWCC	2 cut(s)	28, 86
Bbv12I	GWGCWC	1 cut(s)	65
BccI	CCATC	2 cut(s)	77, 130
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	123, 155
BfaI	CTAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	2 cut(s)	28, 86
BmgT120I	GGNCC	2 cut(s)	28, 86
BmiI	GGNNCC	2 cut(s)	30, 219
BmrFI	CCNGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	88, 122
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	3 cut(s)	168, 245, 288
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	123, 155
BsmFI	GGGAC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	3 cut(s)	169, 244, 289
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	30, 219
BsrDI	GCAATG	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	236
BssNAI	GTATAC	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	177, 231, 297
BstF5I	GGATG	2 cut(s)	88, 122
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	123, 155
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	88, 122
BtsIMutI	CAGTG	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	28, 86
CviJI	RGCY	3 cut(s)	211, 220, 226
CviKI_1	RGCY	3 cut(s)	211, 220, 226
DdeI	CTNAG	3 cut(s)	177, 231, 297
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	28, 86
EcoRII	CCWGG	1 cut(s)	183
FaiI	YATR	5 cut(s)	77, 207, 255, 275, 292
FaqI	GGGAC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	2 cut(s)	95, 109
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	13
HapII	CCGG	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	92, 179
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	3 cut(s)	34, 39, 44
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	3 cut(s)	177, 231, 297
Kpn2I	TCCGGA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	71, 102, 140, 170, 197, 211
MaeI	CTAG	1 cut(s)	147
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	3 cut(s)	66, 243, 258
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	50, 55, 60
MroI	TCCGGA	1 cut(s)	88
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	30, 219
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	30, 219
PspPI	GGNCC	2 cut(s)	28, 86
PsuI	RGATCY	1 cut(s)	236
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	2 cut(s)	28, 86
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	42, 47, 52, 189, 213
SinI	GGWCC	2 cut(s)	28, 86
Sse9I	AATT	3 cut(s)	66, 243, 258
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	183
TasI	AATT	3 cut(s)	66, 243, 258
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	301
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	28, 86
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.