No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761 |
| rosa_laevigata | RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198 |
| rosa_multiflora | Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00219200 |
| rosa_rugosa | Rorug01G0313400 Rorug05G0478600 |
| rosa_samantha | Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100 |
| rosa_wichuraiana | Rw2G011220 Rw4G022300 Rw7G012030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 153 |
| AclWI | GGATC | 2 cut(s) | 78, 91 |
| AcsI | RAATTY | 3 cut(s) | 146, 177, 271 |
| AfaI | GTAC | 1 cut(s) | 306 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 194 |
| AgsI | TTSAA | 2 cut(s) | 80, 176 |
| AhlI | ACTAGT | 1 cut(s) | 128 |
| AluBI | AGCT | 2 cut(s) | 15, 279 |
| AluI | AGCT | 2 cut(s) | 15, 279 |
| AlwI | GGATC | 2 cut(s) | 78, 91 |
| ApeKI | GCWGC | 1 cut(s) | 15 |
| ApoI | RAATTY | 3 cut(s) | 146, 177, 271 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 94, 126 |
| AsuHPI | GGTGA | 1 cut(s) | 112 |
| BamHI | GGATCC | 1 cut(s) | 83 |
| BbvI | GCAGC | 1 cut(s) | 2 |
| BcuI | ACTAGT | 1 cut(s) | 128 |
| BfaI | CTAG | 1 cut(s) | 129 |
| BisI | GCNGC | 1 cut(s) | 16 |
| BlsI | GCNGC | 1 cut(s) | 17 |
| BmiI | GGNNCC | 2 cut(s) | 85, 186 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaBI | GATNNNNATC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 1 cut(s) | 87 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 194 |
| Bse3DI | GCAATG | 1 cut(s) | 36 |
| Bse8I | GATNNNNATC | 1 cut(s) | 8 |
| BseDI | CCNNGG | 1 cut(s) | 87 |
| BseJI | GATNNNNATC | 1 cut(s) | 8 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BseMI | GCAATG | 1 cut(s) | 36 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseXI | GCAGC | 1 cut(s) | 2 |
| BslFI | GGGAC | 1 cut(s) | 108 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 108 |
| Bsp143I | GATC | 1 cut(s) | 83 |
| Bsp19I | CCATGG | 1 cut(s) | 87 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspLI | GGNNCC | 2 cut(s) | 85, 186 |
| BspPI | GGATC | 2 cut(s) | 78, 91 |
| BsrDI | GCAATG | 1 cut(s) | 36 |
| BssECI | CCNNGG | 1 cut(s) | 87 |
| BssMI | GATC | 1 cut(s) | 83 |
| BssNAI | GTATAC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 1 cut(s) | 87 |
| Bst1107I | GTATAC | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| BstDEI | CTNAG | 2 cut(s) | 204, 223 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstKTI | GATC | 1 cut(s) | 86 |
| BstMBI | GATC | 1 cut(s) | 83 |
| BstV1I | GCAGC | 1 cut(s) | 2 |
| BstX2I | RGATCY | 1 cut(s) | 83 |
| BstYI | RGATCY | 1 cut(s) | 83 |
| BstZ17I | GTATAC | 1 cut(s) | 154 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| Csp6I | GTAC | 1 cut(s) | 305 |
| CviAII | CATG | 1 cut(s) | 88 |
| CviJI | RGCY | 4 cut(s) | 15, 185, 200, 279 |
| CviKI_1 | RGCY | 4 cut(s) | 15, 185, 200, 279 |
| CviQI | GTAC | 1 cut(s) | 305 |
| DdeI | CTNAG | 2 cut(s) | 204, 223 |
| DpnI | GATC | 1 cut(s) | 85 |
| DpnII | GATC | 1 cut(s) | 83 |
| Eco130I | CCWWGG | 1 cut(s) | 87 |
| EcoT14I | CCWWGG | 1 cut(s) | 87 |
| ErhI | CCWWGG | 1 cut(s) | 87 |
| FaeI | CATG | 1 cut(s) | 91 |
| FaiI | YATR | 3 cut(s) | 67, 89, 154 |
| FaqI | GGGAC | 1 cut(s) | 108 |
| FatI | CATG | 1 cut(s) | 87 |
| FblI | GTMKAC | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 1 cut(s) | 16 |
| Fsp4HI | GCNGC | 1 cut(s) | 16 |
| FspBI | CTAG | 1 cut(s) | 129 |
| GluI | GCNGC | 1 cut(s) | 16 |
| Hin1II | CATG | 1 cut(s) | 91 |
| HphI | GGTGA | 1 cut(s) | 112 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 5 cut(s) | 18, 36, 41, 267, 310 |
| HpyF3I | CTNAG | 2 cut(s) | 204, 223 |
| Hsp92II | CATG | 1 cut(s) | 91 |
| Kzo9I | GATC | 1 cut(s) | 83 |
| LmnI | GCTCC | 1 cut(s) | 190 |
| LpnPI | CCDG | 1 cut(s) | 201 |
| Lsp1109I | GCAGC | 1 cut(s) | 2 |
| MaeI | CTAG | 1 cut(s) | 129 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 1 cut(s) | 85 |
| MboI | GATC | 1 cut(s) | 83 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MflI | RGATCY | 1 cut(s) | 83 |
| MluCI | AATT | 4 cut(s) | 146, 177, 271, 311 |
| MnlI | CCTC | 2 cut(s) | 61, 82 |
| MspA1I | CMGCKG | 1 cut(s) | 15 |
| MunI | CAATTG | 1 cut(s) | 311 |
| NcoI | CCATGG | 1 cut(s) | 87 |
| NdeII | GATC | 1 cut(s) | 83 |
| NlaIII | CATG | 1 cut(s) | 91 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 186 |
| NmuCI | GTSAC | 1 cut(s) | 100 |
| PkrI | GCNGC | 1 cut(s) | 17 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 186 |
| PsuI | RGATCY | 1 cut(s) | 83 |
| PvuII | CAGCTG | 1 cut(s) | 15 |
| RsaI | GTAC | 1 cut(s) | 306 |
| RsaNI | GTAC | 1 cut(s) | 305 |
| SatI | GCNGC | 1 cut(s) | 16 |
| Sau3AI | GATC | 1 cut(s) | 83 |
| SetI | ASST | 4 cut(s) | 17, 46, 159, 281 |
| SgeI | CNNG | 6 cut(s) | 92, 100, 141, 152, 200, 280 |
| SmlI | CTYRAG | 1 cut(s) | 140 |
| SmoI | CTYRAG | 1 cut(s) | 140 |
| SpeI | ACTAGT | 1 cut(s) | 128 |
| Sse9I | AATT | 4 cut(s) | 146, 177, 271, 311 |
| SspMI | CTAG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 87 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TasI | AATT | 4 cut(s) | 146, 177, 271, 311 |
| TatI | WGTACW | 1 cut(s) | 304 |
| TseFI | GTSAC | 1 cut(s) | 100 |
| TseI | GCWGC | 1 cut(s) | 15 |
| Tsp45I | GTSAC | 1 cut(s) | 100 |
| TspDTI | ATGAA | 1 cut(s) | 275 |
| XapI | RAATTY | 3 cut(s) | 146, 177, 271 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 94, 178 |
| XmiI | GTMKAC | 1 cut(s) | 153 |
| XspI | CTAG | 1 cut(s) | 129 |