Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

47625890 .. 47627997

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCTACTCTCGTTGCCAAAAGGAAAATGCTTGCTGAGCCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAGGCCCCACTCAGAGATCTGCAGTTACTCCTTATAGAATTGTTCTTGGTAATATAAAAGACAAGCAATCATGTGGATCAGGGATCCTAGCTGATGGTCGGCTTGATGATTTGATCCAAAGAGTTGCTACCTTTGGGATGGTATTAATGAAAGCTCGACTTGCGTCAGGTGTGCTTTTATTTTATAGAAGAAGTTACTACCCCAGGCTGAGCTTGGCTTCGTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

10.48

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	157, 163, 170, 187
AfiI	CCNNNNNNNGG	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	41, 281
AluBI	AGCT	4 cut(s)	69, 170, 233, 291
AluI	AGCT	4 cut(s)	69, 170, 233, 291
AlwI	GGATC	4 cut(s)	157, 163, 170, 187
AoxI	GGCC	1 cut(s)	82
AseI	ATTAAT	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	53, 83
AvaII	GGWCC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	41
BccI	CCATC	2 cut(s)	167, 211
BciT130I	CCWGG	2 cut(s)	43, 283
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	95
BlpI	GCTNAGC	2 cut(s)	35, 287
Bme1390I	CCNGG	2 cut(s)	43, 283
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	53, 83
BmiI	GGNNCC	3 cut(s)	77, 85, 164
BmrFI	CCNGG	2 cut(s)	43, 283
BoxI	GACNNNNGTC	1 cut(s)	241
Bpu1102I	GCTNAGC	2 cut(s)	35, 287
BsaJI	CCNNGG	3 cut(s)	41, 79, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	43, 283
BseDI	CCNNGG	3 cut(s)	41, 79, 281
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	3 cut(s)	26, 104, 278
BseNI	ACTGG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	95, 155, 162, 192
Bsp1720I	GCTNAGC	2 cut(s)	35, 287
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	3 cut(s)	27, 103, 279
BspLI	GGNNCC	3 cut(s)	77, 85, 164
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	4 cut(s)	157, 163, 170, 187
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	41, 79, 281
BssMI	GATC	4 cut(s)	95, 155, 162, 192
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	43, 283
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	3 cut(s)	35, 90, 287
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	4 cut(s)	98, 158, 165, 195
BstMBI	GATC	4 cut(s)	95, 155, 162, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 75, 239
BstNI	CCWGG	2 cut(s)	43, 283
BstPAI	GACNNNNGTC	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	41, 281
BstSFI	CTRYAG	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	95, 162
BstYI	RGATCY	2 cut(s)	95, 162
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	53, 83
CseI	GACGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	150
DdeI	CTNAG	3 cut(s)	35, 90, 287
DpnI	GATC	4 cut(s)	97, 157, 164, 194
DpnII	GATC	4 cut(s)	95, 155, 162, 192
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	41, 281
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	153
FaiI	YATR	5 cut(s)	114, 134, 151, 264, 307
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	149
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	84
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 75, 239
HpyF3I	CTNAG	3 cut(s)	35, 90, 287
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	95, 155, 162, 192
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	8 cut(s)	28, 55, 69, 76, 144, 231, 268, 295
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	103, 272
MalI	GATC	4 cut(s)	97, 157, 164, 194
MboI	GATC	4 cut(s)	95, 155, 162, 192
MboII	GAAGA	1 cut(s)	279
MflI	RGATCY	2 cut(s)	95, 162
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	27
MseI	TTAA	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	43, 283
MvaI	CCWGG	2 cut(s)	43, 283
MwoI	GCNNNNNNNGC	3 cut(s)	36, 75, 239
NdeII	GATC	4 cut(s)	95, 155, 162, 192
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	3 cut(s)	77, 85, 164
PshAI	GACNNNNGTC	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	41, 281
PspGI	CCWGG	2 cut(s)	41, 281
PspN4I	GGNNCC	3 cut(s)	77, 85, 164
PspPI	GGNCC	2 cut(s)	53, 83
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	95, 162
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	4 cut(s)	95, 155, 162, 192
Sau96I	GGNCC	2 cut(s)	53, 83
ScrFI	CCNGG	2 cut(s)	43, 283
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	8 cut(s)	47, 55, 71, 172, 212, 235, 250, 293
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	41, 281
StyI	CCWWGG	1 cut(s)	79
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.