Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

86972280 .. 86995976

Gene Structure 23697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG564200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTCTACTTACCATCTGCAGAATCCTGCCAACAAGAGGGAGATCATTTGCGATGACAAGCTGAAGGAGTTGTTTGAAGGGAAGGAAAAGATATTGGCCTCTATCTCTTTATCTCGCGTCGACTCACTCTCTGATGGTCCGGAATCTCCAAAATCTCCAATAGCGAAGTCTCCATCCCAGAACTCTCTTCATAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTAAGTCCCAAGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAGGCCCCCACTCAGAGATCTGCAATTACTCCTTATAGATTTGTTCTTGATGGATGAAAAGGTTTATAAAGTTGAGGTGACTGCGCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

9.04

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	4 - 31	4.6e-09	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc16I	TGCGCA	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	5, 120
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	2 cut(s)	61, 262
AluI	AGCT	2 cut(s)	61, 262
Alw26I	GTCTC	2 cut(s)	174, 206
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	2 cut(s)	96, 275
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	3 cut(s)	137, 246, 276
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	2 cut(s)	137, 246
BccI	CCATC	4 cut(s)	21, 128, 181, 316
BcoDI	GTCTC	2 cut(s)	174, 206
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	17
BglII	AGATCT	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	137, 246
BmgT120I	GGNCC	3 cut(s)	137, 246, 276
BmiI	GGNNCC	2 cut(s)	270, 278
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	249
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	173, 331
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	98, 277
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	174, 206
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	98, 277
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	42, 289
BspANI	GGCC	2 cut(s)	98, 277
BspCNI	CTCAG	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	270, 278
BspMAI	CTGCAG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	2 cut(s)	42, 289
BssT1I	CCWWGG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	228, 284
BstF5I	GGATG	2 cut(s)	173, 331
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	45, 292
BstMAI	GTCTC	2 cut(s)	174, 206
BstMBI	GATC	2 cut(s)	42, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	98, 277
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	173, 331
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	137, 246, 276
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	5 cut(s)	61, 98, 262, 271, 277
CviKI_1	RGCY	5 cut(s)	61, 98, 262, 271, 277
DdeI	CTNAG	2 cut(s)	228, 284
DpnI	GATC	2 cut(s)	44, 291
DpnII	GATC	2 cut(s)	42, 289
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	137, 246
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	1 cut(s)	362
FaiI	YATR	4 cut(s)	192, 308, 339, 360
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	358
FblI	GTMKAC	2 cut(s)	5, 120
FokI	GGATG	2 cut(s)	160, 338
FspBI	CTAG	1 cut(s)	198
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	98, 277
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	22, 122, 143
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	2 cut(s)	6, 121
Hpy188I	TCNGA	2 cut(s)	133, 287
Hpy188III	TCNNGA	3 cut(s)	140, 256, 319
Hpy8I	GTNNAC	2 cut(s)	6, 121
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	4 cut(s)	58, 71, 76, 237
HpyCH4V	TGCA	2 cut(s)	19, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	228, 284
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	42, 289
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	39, 153, 191, 262, 269
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	44, 291
MboI	GATC	2 cut(s)	42, 289
MboII	GAAGA	1 cut(s)	179
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	30, 109, 340
MroI	TCCGGA	1 cut(s)	139
MspI	CCGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	2 cut(s)	42, 289
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	270, 278
NmuCI	GTSAC	1 cut(s)	349
NsbI	TGCGCA	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	22, 143
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PsiI	TTATAA	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	270, 278
PspPI	GGNCC	3 cut(s)	137, 246, 276
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	42, 289
Sau96I	GGNCC	3 cut(s)	137, 246, 276
SchI	GAGTC	1 cut(s)	116
SetI	ASST	5 cut(s)	63, 248, 264, 336, 351
SfcI	CTRYAG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	137, 246
Sse9I	AATT	1 cut(s)	296
SspMI	CTAG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	22, 143
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	179, 342
VpaK11BI	GGWCC	2 cut(s)	137, 246
XmiI	GTMKAC	2 cut(s)	5, 120
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.