Rh7DG279100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
30127795 .. 30128136
342 bp
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UTR
Exon/CDS
Intron
Rh7DG279100.1

Sequence Viewer

Length: 342 bp
ATGGTAAAACGAAGAGGGGTTTCTGGTATTTTGACATCTGGGCATCTTGTTCATCAAAACCGCGAAAACTTATCTGGTTTGGGCGTTTGGCAGCTCCTCTCTCCCGGGCTTCAGACGGGGTCGGAAGTGAATTACGAGTTGGACCAAATTGCGAATCGAGCGACCTCAATGATGTGGTTTCTCTACAACAAAGTCGATGACGAGTCTCTCTGCATACACTTCCTCAATGGTTTCTGTCTCTTTCTCGTTTTTATTTTCTCAACATTTCTACTTTCAACAATTCGAATTGATTATCATCGGAATTTGAGTTTTGTTTGCTCGATTAAGGACCTTAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

7.77

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 210, 242
Ama87I CYCGRG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 142, 328
AsuC2I CCSGG 2 cut(s) 105, 106
AsuII TTCGAA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 142, 328
BbvI GCAGC 1 cut(s) 103
BcnI CCSGG 2 cut(s) 105, 106
BcoDI GTCTC 2 cut(s) 210, 242
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 2 cut(s) 105, 106
Bme18I GGWCC 2 cut(s) 142, 328
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 142, 328
BmrFI CCNGG 2 cut(s) 105, 106
BmsI GCATC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 2 cut(s) 105, 106
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 210, 242
BsoBI CYCGRG 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 283
BspACI CCGC 1 cut(s) 61
BspFNI CGCG 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 283
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 210, 242
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 103, 104
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 142, 328
Cfr9I CCCGGG 1 cut(s) 104
CviJI RGCY 2 cut(s) 94, 109
CviKI_1 RGCY 2 cut(s) 94, 109
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 142, 328
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 328
FaiI YATR 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HapII CCGG 1 cut(s) 105
HinfI GANTC 2 cut(s) 154, 203
HpaII CCGG 1 cut(s) 105
Hpy188I TCNGA 3 cut(s) 114, 124, 300
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 9, 24, 60, 118
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 24
MluCI AATT 5 cut(s) 130, 147, 279, 285, 301
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 102, 120
MnlI CCTC 4 cut(s) 8, 107, 175, 233
MseI TTAA 2 cut(s) 324, 333
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 105, 106
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 158
NciI CCSGG 2 cut(s) 105, 106
NspV TTCGAA 1 cut(s) 283
PfeI GAWTC 1 cut(s) 154
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspPI GGNCC 2 cut(s) 142, 328
PspPPI RGGWCCY 1 cut(s) 328
PsyI GACNNNGTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 324, 333
SatI GCNGC 1 cut(s) 92
Sau96I GGNCC 2 cut(s) 142, 328
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 105, 106
SetI ASST 3 cut(s) 96, 167, 333
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 2 cut(s) 142, 328
SmaI CCCGGG 1 cut(s) 106
Sse9I AATT 5 cut(s) 130, 147, 279, 285, 301
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 103, 104
TaqI TCGA 4 cut(s) 157, 195, 283, 320
TasI AATT 5 cut(s) 130, 147, 279, 285, 301
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 324, 333
Tru9I TTAA 2 cut(s) 324, 333
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 41
TspMI CCCGGG 1 cut(s) 104
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 142, 328
XapI RAATTY 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.