Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

44629030 .. 44632114

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGACACTTGGACCCCGAAAACCTCACCTCACCACCAGAGAGCAATTTCTTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCATAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGCAATCATGTGAATCTGGGATCCTAGCTGATGGTCGGCTTGCTGATTTGATCCGAAGAGTTGCTACCTTTGGGATGAAGAAGTTGCTACCCCAGGCTGAGCTTGGCTTCCTCAACATAGGAAGCCGCCCCTCAAGAAGAAAGCGCGCTACTGGAATTGGACATCTTCGGGCAATTCCATGGGTGTTTGCATGGACTCAAACCAGATTTGTCTTCCAGCTTGGCTTGGAGTTAAACCCCTTGTTGATCTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

140

Amino Acids

15.53

Weight (kDa)

11.34

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	85 - 126	2.7e-17	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	3 cut(s)	178, 191, 208
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	191, 265, 382
AluI	AGCT	3 cut(s)	191, 265, 382
Alw26I	GTCTC	2 cut(s)	102, 134
AlwI	GGATC	3 cut(s)	178, 191, 208
Aor13HI	TCCGGA	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	309, 311
AspS9I	GGNCC	2 cut(s)	12, 65
AsuHPI	GGTGA	2 cut(s)	18, 23
AvaII	GGWCC	2 cut(s)	12, 65
BamHI	GGATCC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BbsI	GAAGAC	1 cut(s)	367
BccI	CCATC	3 cut(s)	56, 109, 188
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	102, 134
BfaI	CTAG	2 cut(s)	126, 188
BisI	GCNGC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	12, 65
BmgT120I	GGNCC	2 cut(s)	12, 65
BmiI	GGNNCC	2 cut(s)	14, 185
BmrFI	CCNGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	367
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	255, 341
BsaWI	WCCGGW	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	255, 341
BseGI	GGATG	3 cut(s)	67, 101, 243
BseMII	CTCAG	2 cut(s)	147, 252
BseNI	ACTGG	1 cut(s)	319
BsePI	GCGCGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	102, 134
BsmFI	GGGAC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	183, 213, 408
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	148, 253
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	14, 185
BspPI	GGATC	3 cut(s)	178, 191, 208
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	255, 341
BssHII	GCGCGC	1 cut(s)	307
BssMI	GATC	3 cut(s)	183, 213, 408
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	120, 214
BstC8I	GCNNGC	2 cut(s)	204, 309
BstDEI	CTNAG	2 cut(s)	156, 261
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	3 cut(s)	67, 101, 243
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	2 cut(s)	309, 311
BstKTI	GATC	3 cut(s)	186, 216, 411
BstMAI	GTCTC	2 cut(s)	102, 134
BstMBI	GATC	3 cut(s)	183, 213, 408
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	67, 101, 243
Cac8I	GCNNGC	2 cut(s)	204, 309
CfoI	GCGC	2 cut(s)	309, 311
Cfr13I	GGNCC	2 cut(s)	12, 65
CviAII	CATG	3 cut(s)	171, 342, 354
CviJI	RGCY	8 cut(s)	191, 202, 260, 265, 270, 288, 382, 387
CviKI_1	RGCY	8 cut(s)	191, 202, 260, 265, 270, 288, 382, 387
DdeI	CTNAG	2 cut(s)	156, 261
DpnI	GATC	3 cut(s)	185, 215, 410
DpnII	GATC	3 cut(s)	183, 213, 408
Eam1104I	CTCTTC	2 cut(s)	120, 214
EarI	CTCTTC	2 cut(s)	120, 214
Eco130I	CCWWGG	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	12, 65
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	174, 345, 357
FaiI	YATR	6 cut(s)	56, 108, 172, 281, 343, 355
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	170, 341, 353
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	3 cut(s)	74, 88, 250
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	126, 188
GlaI	GCGC	2 cut(s)	308, 310
GluI	GCNGC	1 cut(s)	289
GsaI	CCCAGC	1 cut(s)	166
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	309, 311
Hin1II	CATG	3 cut(s)	174, 345, 357
Hin6I	GCGC	2 cut(s)	307, 309
HinP1I	GCGC	2 cut(s)	307, 309
HinfI	GANTC	4 cut(s)	71, 158, 176, 358
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	18, 23
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	2 cut(s)	68, 297
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	156, 261
Hsp92II	CATG	3 cut(s)	174, 345, 357
HspAI	GCGC	2 cut(s)	307, 309
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	183, 213, 408
LpnPI	CCDG	9 cut(s)	50, 81, 165, 176, 242, 269, 300, 379, 392
MaeI	CTAG	2 cut(s)	126, 188
MalI	GATC	3 cut(s)	185, 215, 410
MboI	GATC	3 cut(s)	183, 213, 408
MboII	GAAGA	7 cut(s)	42, 107, 231, 253, 312, 320, 367
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	3 cut(s)	45, 318, 336
MlyI	GAGTC	2 cut(s)	167, 352
MnlI	CCTC	4 cut(s)	34, 39, 284, 304
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	1 cut(s)	395
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	3 cut(s)	183, 213, 408
NlaIII	CATG	3 cut(s)	174, 345, 357
NlaIV	GGNNCC	2 cut(s)	14, 185
PauI	GCGCGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	71, 176
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	2 cut(s)	166, 352
PpsI	GAGTC	2 cut(s)	166, 352
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	14, 185
PspPI	GGNCC	2 cut(s)	12, 65
PsuI	RGATCY	1 cut(s)	183
PteI	GCGCGC	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	3 cut(s)	183, 213, 408
Sau96I	GGNCC	2 cut(s)	12, 65
SchI	GAGTC	2 cut(s)	167, 352
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	6 cut(s)	26, 31, 193, 233, 267, 384
SinI	GGWCC	2 cut(s)	12, 65
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	3 cut(s)	45, 318, 336
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	126, 188
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	341
TasI	AATT	3 cut(s)	45, 318, 336
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	71, 176
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	12, 65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XspI	CTAG	2 cut(s)	126, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.