Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

58600718 .. 58602041

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG430800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTGAAAGCAGCAGGGGTTAATGGTATTTTGGCATCTGGGATGAGGTTTACAGCTGGGTTGGCATCCTCTCATCAAAACCATGAAAACTTGTCTAGTTTGGGCGTTTGGCAGCTCCTCTCCCCTGGGCTTCAGATGGGGTCAGAAGTGAATTACGAATCAGACCAATTTGCGAATCGAGCGACCTTCCCATGCAATGATGTGGTGGTGATCGGTGAACCTCTCGAACATTCTAATTCAGTGCTCTCAGCTCGAATCCGTAACATAATCAGGGGTGCCAGGCTTGGCTCAATAGTCATCCCACAAGCAGAAACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCTATTCAAGGATGCGTGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

6.03

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	124, 278
AluBI	AGCT	3 cut(s)	56, 115, 251
AluI	AGCT	3 cut(s)	56, 115, 251
Alw21I	GWGCWC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	11, 112
AsuHPI	GGTGA	4 cut(s)	16, 220, 227, 320
BanI	GGYRCC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	23, 124
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	126, 280
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	2 cut(s)	12, 113
BlsI	GCNGC	2 cut(s)	13, 114
Bme1390I	CCNGG	2 cut(s)	126, 280
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	126, 280
BmsI	GCATC	3 cut(s)	44, 74, 361
BsaJI	CCNNGG	2 cut(s)	124, 125
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	126, 280
BseDI	CCNNGG	2 cut(s)	124, 125
BseGI	GGATG	4 cut(s)	48, 65, 297, 376
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	23, 124
BseYI	CCCAGC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	124, 125
BssMI	GATC	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	126, 280
Bst4CI	ACNGT	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	4 cut(s)	48, 65, 297, 376
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 179
BstNI	CCWGG	2 cut(s)	126, 280
BstSCI	CCNGG	2 cut(s)	124, 278
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	23, 124
BtsCI	GGATG	4 cut(s)	48, 65, 297, 376
BtsIMutI	CAGTG	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	314
CviAII	CATG	2 cut(s)	83, 192
CviJI	RGCY	6 cut(s)	56, 115, 130, 251, 283, 288
CviKI_1	RGCY	6 cut(s)	56, 115, 130, 251, 283, 288
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	124, 278
FaeI	CATG	2 cut(s)	86, 195
FaiI	YATR	4 cut(s)	84, 193, 266, 354
FatI	CATG	2 cut(s)	82, 191
Fnu4HI	GCNGC	2 cut(s)	12, 113
FokI	GGATG	4 cut(s)	52, 55, 284, 383
Fsp4HI	GCNGC	2 cut(s)	12, 113
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	12, 113
GsaI	CCCAGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	86, 195
HinfI	GANTC	4 cut(s)	158, 175, 255, 320
HphI	GGTGA	4 cut(s)	16, 220, 227, 320
Hpy166II	GTNNAC	2 cut(s)	51, 218
Hpy188I	TCNGA	3 cut(s)	135, 145, 163
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	51, 218
HpyAV	CCTTC	2 cut(s)	196, 341
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 179
HpyF3I	CTNAG	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	86, 195
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	7 cut(s)	24, 42, 111, 138, 256, 265, 292
Lsp1109I	GCAGC	2 cut(s)	23, 124
LweI	GCATC	3 cut(s)	44, 74, 361
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	151, 167, 235
MnlI	CCTC	6 cut(s)	39, 79, 128, 231, 348, 369
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	126, 280
MvaI	CCWGG	2 cut(s)	126, 280
MwoI	GCNNNNNNNGC	2 cut(s)	62, 179
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	86, 195
NlaIV	GGNNCC	1 cut(s)	277
PasI	CCCWGGG	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	158, 175, 255, 320
PkrI	GCNGC	2 cut(s)	13, 114
Psp6I	CCWGG	2 cut(s)	124, 278
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	124, 278
PspN4I	GGNNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	2 cut(s)	12, 113
Sau3AI	GATC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	126, 280
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	50, 58, 117, 188, 223, 253, 333
SfaNI	GCATC	3 cut(s)	44, 74, 361
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	151, 167, 235
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	124, 278
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	3 cut(s)	178, 225, 253
TasI	AATT	3 cut(s)	151, 167, 235
TfiI	GAWTC	4 cut(s)	158, 175, 255, 320
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	2 cut(s)	11, 112
TspDTI	ATGAA	2 cut(s)	99, 312
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	246
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.