Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

58332092 .. 58335754

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTAGTCTTGTTGCCGAAAGGAAAATGTTTGTTGTGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAATTAAGCCCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTATTCTTGCAATCATGTGGATCAGGGATCCTAGCTGATGGTGGGCTTGATGATTTGATCCGAAGAACGTTGCTACCCCAGGCTGAGCTTGGCTTCCTCAACGTAGGAAGCTGCCCCTCAAGAAGAAAGAGCTCTACTGGAATTGGACATCTTCGGCAGTTCCATGGGTGTTTGCATGGACTCAAGCCAGATTTGTCTTCCAGCTTTGCTTGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

9.26

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	4 cut(s)	145, 151, 158, 175
AjnI	CCWGG	2 cut(s)	41, 201
AluBI	AGCT	6 cut(s)	69, 158, 211, 234, 255, 327
AluI	AGCT	6 cut(s)	69, 158, 211, 234, 255, 327
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	4 cut(s)	145, 151, 158, 175
ApeKI	GCWGC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	43, 203
BfaI	CTAG	2 cut(s)	5, 155
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	43, 203
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	77, 152
BmrFI	CCNGG	2 cut(s)	43, 203
BpiI	GAAGAC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	226, 290
BsaJI	CCNNGG	3 cut(s)	41, 201, 286
Bse1I	ACTGG	2 cut(s)	56, 265
BseBI	CCWGG	2 cut(s)	43, 203
BseDI	CCNNGG	3 cut(s)	41, 201, 286
BseMII	CTCAG	2 cut(s)	109, 198
BseNI	ACTGG	2 cut(s)	56, 265
BseXI	GCAGC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	4 cut(s)	100, 143, 150, 180
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	108, 199
BspLI	GGNNCC	2 cut(s)	77, 152
BspPI	GGATC	4 cut(s)	145, 151, 158, 175
BsrI	ACTGG	2 cut(s)	56, 265
BssECI	CCNNGG	3 cut(s)	41, 201, 286
BssMI	GATC	4 cut(s)	100, 143, 150, 180
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	43, 203
BstDEI	CTNAG	2 cut(s)	95, 207
BstDSI	CCRYGG	1 cut(s)	286
BstKTI	GATC	4 cut(s)	103, 146, 153, 183
BstMBI	GATC	4 cut(s)	100, 143, 150, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	43, 203
BstSCI	CCNGG	2 cut(s)	41, 201
BstV1I	GCAGC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	100, 150
BstYI	RGATCY	2 cut(s)	100, 150
BtgI	CCRYGG	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	3 cut(s)	138, 287, 299
DdeI	CTNAG	2 cut(s)	95, 207
DpnI	GATC	4 cut(s)	102, 145, 152, 182
DpnII	GATC	4 cut(s)	100, 143, 150, 180
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	41, 201
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	141, 290, 302
FaiI	YATR	4 cut(s)	119, 139, 288, 300
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	3 cut(s)	137, 286, 298
Fnu4HI	GCNGC	1 cut(s)	235
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	2 cut(s)	5, 155
GluI	GCNGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	141, 290, 302
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	1 cut(s)	303
Hpy188I	TCNGA	2 cut(s)	98, 185
Hpy188III	TCNNGA	2 cut(s)	63, 243
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	191, 225
HpyCH4V	TGCA	3 cut(s)	106, 133, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	95, 207
HpySE526I	ACGT	2 cut(s)	191, 225
Hsp92II	CATG	3 cut(s)	141, 290, 302
Kzo9I	GATC	4 cut(s)	100, 143, 150, 180
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	5, 155
MaeII	ACGT	2 cut(s)	191, 225
MalI	GATC	4 cut(s)	102, 145, 152, 182
MboI	GATC	4 cut(s)	100, 143, 150, 180
MboII	GAAGA	4 cut(s)	198, 258, 266, 312
MflI	RGATCY	2 cut(s)	100, 150
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	4 cut(s)	81, 107, 122, 264
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	230, 250
MseI	TTAA	2 cut(s)	84, 340
MspR9I	CCNGG	2 cut(s)	43, 203
MvaI	CCWGG	2 cut(s)	43, 203
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	100, 143, 150, 180
NlaIII	CATG	3 cut(s)	141, 290, 302
NlaIV	GGNNCC	2 cut(s)	77, 152
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	257
Psp1406I	AACGTT	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	41, 201
PspGI	CCWGG	2 cut(s)	41, 201
PspN4I	GGNNCC	2 cut(s)	77, 152
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	100, 150
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	84, 340
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	4 cut(s)	100, 143, 150, 180
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	43, 203
SduI	GDGCHC	1 cut(s)	257
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	241, 305
SmoI	CTYRAG	2 cut(s)	241, 305
Sse9I	AATT	4 cut(s)	81, 107, 122, 264
SspMI	CTAG	2 cut(s)	5, 155
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	41, 201
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	2 cut(s)	194, 228
TasI	AATT	4 cut(s)	81, 107, 122, 264
Tru1I	TTAA	2 cut(s)	84, 340
Tru9I	TTAA	2 cut(s)	84, 340
TseI	GCWGC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	5, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.