Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

42950770 .. 42953132

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTGAAACAAGCGGGGGCTAATGGTATTTTGGCATCTGGGATGAGGTTTACAGCTGGGTTGGGCATCCTCTTCATCAAAACCATGAAAACTTTGTCTGGTTTGGGCGTTTGGCAGCTCCTCCCCTGGGCTTCAGACGGGGTCAGAAAGAGCAATTTAGTCGATACACGGGATGGTCCGGAATCCCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTTGTTGCCAAAAGGAAAATGTTTGTTGTGTCCCAGGTTGGAAGACAAGGGTCCCTTGCAGAAGAAGATGTCAAAATGGCTTCATGTGCTGATGAAATATATATATTTATCTTTACCCAGTGGAGCTACAATCTAAAAAGATTATCTTCAAATGAAACTGTAGATTCATTTCACCTTCTCCCTCCCACAGAAAACTATGTTCCTCTATTCAAGGATCCATGGAGATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

9.63

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	449, 462
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	390, 451
AjnI	CCWGG	2 cut(s)	125, 273
AluBI	AGCT	3 cut(s)	56, 118, 366
AluI	AGCT	3 cut(s)	56, 118, 366
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	449, 462
Aor13HI	TCCGGA	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	176, 291
AsuHPI	GGTGA	2 cut(s)	16, 404
AvaII	GGWCC	2 cut(s)	176, 291
BamHI	GGATCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	167, 220
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	2 cut(s)	127, 275
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	127, 275
Bme18I	GGWCC	2 cut(s)	176, 291
BmgT120I	GGNCC	2 cut(s)	176, 291
BmiI	GGNNCC	3 cut(s)	292, 293, 456
BmrFI	CCNGG	2 cut(s)	127, 275
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	44, 75
BmuI	ACTGGG	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	125, 126, 273, 458
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	127, 275
BseDI	CCNNGG	4 cut(s)	125, 126, 273, 458
BseGI	GGATG	4 cut(s)	48, 66, 178, 212
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	2 cut(s)	256, 277
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	256, 277
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	1 cut(s)	14
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	292, 293, 456
BspPI	GGATC	2 cut(s)	449, 462
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	125, 126, 273, 458
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	127, 275
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	77, 231
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	4 cut(s)	48, 66, 178, 212
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	2 cut(s)	127, 275
BstPAI	GACNNNNGTC	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	125, 273
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	4 cut(s)	48, 66, 178, 212
BtsIMutI	CAGTG	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	176, 291
CviAII	CATG	3 cut(s)	85, 324, 459
CviJI	RGCY	6 cut(s)	20, 56, 118, 131, 320, 366
CviKI_1	RGCY	6 cut(s)	20, 56, 118, 131, 320, 366
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	77, 231
EarI	CTCTTC	2 cut(s)	77, 231
Eco130I	CCWWGG	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	176, 291
Eco57I	CTGAAG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	125, 273
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	3 cut(s)	88, 327, 462
FaiI	YATR	7 cut(s)	86, 325, 340, 342, 344, 438, 460
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 370, 402
FaqI	GGGAC	2 cut(s)	256, 277
FatI	CATG	3 cut(s)	84, 323, 458
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	4 cut(s)	53, 55, 185, 199
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	60
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	88, 327, 462
HinfI	GANTC	2 cut(s)	182, 404
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	2 cut(s)	16, 404
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	136, 146
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	88, 327, 462
KflI	GGGWCCC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	123, 363
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	44, 75
MaeI	CTAG	1 cut(s)	237
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	6 cut(s)	64, 218, 294, 314, 317, 378
MflI	RGATCY	1 cut(s)	454
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	5 cut(s)	39, 80, 131, 432, 453
MroI	TCCGGA	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	127, 275
MvaI	CCWGG	2 cut(s)	127, 275
MwoI	GCNNNNNNNGC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	88, 327, 462
NlaIV	GGNNCC	3 cut(s)	292, 293, 456
PasI	CCCWGGG	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	182, 404
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	291
PshAI	GACNNNNGTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	125, 273
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	125, 273
PspN4I	GGNNCC	3 cut(s)	292, 293, 456
PspPI	GGNCC	2 cut(s)	176, 291
PspPPI	RGGWCCY	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	454
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	56
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	2 cut(s)	176, 291
ScrFI	CCNGG	2 cut(s)	127, 275
SetI	ASST	6 cut(s)	50, 58, 120, 279, 368, 417
SfaNI	GCATC	2 cut(s)	44, 75
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	176, 291
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	125, 273
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	182, 404
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	6 cut(s)	64, 101, 312, 348, 396, 408
TspRI	CASTG	1 cut(s)	365
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	176, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.