Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

11388804 .. 11398992

Gene Structure 10189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG135700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAATGACCATGAGTTTATGCCTTTCAAAGGCGGCAATGGACACTCGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGCACAATTTCGTCTATACAGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCGTTGCCAAAAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTTCCAGTTTCCATAAGCTTTTGGAGCCAAAGCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGACAAGGTGAGATTTGTATGCTCAGAGCTGAGAGCTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

114

Amino Acids

12.59

Weight (kDa)

9.21

Isoelectric Point (pI)

76.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	232, 329, 336
AluI	AGCT	3 cut(s)	232, 329, 336
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	144, 176
Aor13HI	TCCGGA	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	49, 107
AsuHPI	GGTGA	4 cut(s)	55, 60, 65, 320
AvaII	GGWCC	2 cut(s)	49, 107
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	2 cut(s)	98, 151
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	144, 176
BfaI	CTAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	2 cut(s)	49, 107
BmgT120I	GGNCC	2 cut(s)	49, 107
BmiI	GGNNCC	2 cut(s)	51, 240
BmrFI	CCNGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	109, 143
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	4 cut(s)	189, 266, 321, 337
BseNI	ACTGG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	144, 176
BsmFI	GGGAC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	4 cut(s)	190, 265, 322, 336
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	51, 240
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	4 cut(s)	198, 252, 323, 330
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	109, 143
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	2 cut(s)	144, 176
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	109, 143
Cfr13I	GGNCC	2 cut(s)	49, 107
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	5 cut(s)	232, 241, 247, 329, 336
CviKI_1	RGCY	5 cut(s)	232, 241, 247, 329, 336
DdeI	CTNAG	4 cut(s)	198, 252, 323, 330
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	49, 107
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	14
FaiI	YATR	8 cut(s)	12, 20, 98, 228, 276, 296, 320, 339
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	116, 130
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	34
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	113, 200
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	4 cut(s)	55, 60, 65, 320
Hpy188I	TCNGA	3 cut(s)	49, 255, 326
Hpy188III	TCNNGA	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	4 cut(s)	198, 252, 323, 330
Hsp92II	CATG	1 cut(s)	14
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	86, 92, 123, 161, 191, 218, 232
MaeI	CTAG	1 cut(s)	168
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	87, 264, 279
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	71, 76, 81
MroI	TCCGGA	1 cut(s)	109
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	51, 240
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	51, 240
PspPI	GGNCC	2 cut(s)	49, 107
PsuI	RGATCY	1 cut(s)	257
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	2 cut(s)	49, 107
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	63, 68, 73, 210, 234, 310, 331, 338
SinI	GGWCC	2 cut(s)	49, 107
Sse9I	AATT	3 cut(s)	87, 264, 279
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	204
TasI	AATT	3 cut(s)	87, 264, 279
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	49, 107
XagI	CCTNNNNNAGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.