Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

43147838 .. 43149363

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGGGAAAGCTGAGGAGAAATGGCCATTTCCAGAAGCCTAGCAAGCCTTCCATGAGAGATTATAGTGCAAATAATTACTATGGTGAATCAAGAGCCTTGAAGCCATTGATCGATACCCCATTGATGGACACCCCACATCACGCCACTTTTGAAGATGAATGCACACTGTTCGCCACTTTCTGCCGGAGGAAGCCAGCAGCTTCAACCGATGACGTGTATTATATTACTTTTTCTGGAGGCTCAGTATCTAATTTAGTAGTCTCACAAGCACAAATGGCAAGAGAGGCTTGCAAAAGCTTACCTATTAACTATGGGGATGTCATCCATTCTATAACAATGGATGAGCAAAATCCCCCGCTCCATGCGTGGGTTACATTTCACACTCCAGAAATGGCAAAAGGTGTGCTTGGTGAGGGACCTCTGCCTGTGAAGATGTTCATGTTAGGTGGGAAGAGCATCTGGCTCAAACCCACCACCATCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

162

Amino Acids

18.06

Weight (kDa)

8.43

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	361
AciI	CCGC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	127, 370
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	3 cut(s)	103, 155, 207
AjiI	CACGTC	1 cut(s)	217
AluBI	AGCT	3 cut(s)	13, 203, 300
AluI	AGCT	3 cut(s)	13, 203, 300
Alw26I	GTCTC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	98, 425
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	121, 488
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	2 cut(s)	42, 487
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	258, 372
Bpu10I	CCTNAGC	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 370
BseCI	ATCGAT	1 cut(s)	114
BseGI	GGATG	4 cut(s)	324, 325, 349, 480
BseLI	CCNNNNNNNGG	2 cut(s)	127, 370
BseMII	CTCAG	2 cut(s)	5, 258
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	127, 370
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	6, 257
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	361
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	47, 198, 292
BstDEI	CTNAG	2 cut(s)	14, 244
BstF5I	GGATG	4 cut(s)	324, 325, 349, 480
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 278, 287
BstV1I	GCAGC	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	27
BsuTUI	ATCGAT	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	324, 325, 349, 480
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	3 cut(s)	47, 198, 292
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	114
CviAII	CATG	3 cut(s)	55, 365, 442
DdeI	CTNAG	2 cut(s)	14, 244
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco47I	GGWCC	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	419
FaeI	CATG	3 cut(s)	58, 368, 445
FaiI	YATR	8 cut(s)	56, 66, 84, 225, 315, 335, 366, 443
FalI	AAGNNNNNCTT	4 cut(s)	274, 306, 393, 425
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	54, 364, 441
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	4 cut(s)	311, 332, 356, 467
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	42, 487
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	258, 372
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	3 cut(s)	58, 368, 445
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	98, 425
Hpy188III	TCNNGA	4 cut(s)	34, 93, 237, 389
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	71, 165, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 278, 287
HpyF3I	CTNAG	2 cut(s)	14, 244
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	58, 368, 445
Kzo9I	GATC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	7 cut(s)	47, 200, 210, 222, 402, 441, 448
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	42, 487
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	113
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	167, 445, 466
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	2 cut(s)	76, 253
MluNI	TGGCCA	1 cut(s)	27
MnlI	CCTC	6 cut(s)	9, 183, 233, 280, 409, 432
Mox20I	TGGCCA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	46, 278, 287
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	3 cut(s)	58, 368, 445
NlaIV	GGNNCC	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	419
SetI	ASST	8 cut(s)	15, 205, 219, 302, 307, 406, 424, 451
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	76, 253
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	2 cut(s)	42, 487
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	76, 253
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	174, 430
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	2 cut(s)	42, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.