Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

11349405 .. 11352029

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTTGGCAGCTTGTTGGTAAGTCGATGACGGCAATTTGTAGGCAGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGAGCAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTTGCCAAAAGGAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAACCAAGCCCCCACTCAGAGATCTGCAATTACTCCTTATAGAATTGTTCTTGGTAATATAAAAAGTGACAAGCTTATGAAGACACGAAGACGATTGGAGCTTCTTCTAGAGGATCTTCCTTGTTATTTTAGTCTAACGGAGTATTATGACACATCAGATGAAGTTATAGAACTCCCTCCCTCCCTCTCTCTCTCTCTCTCTGCAGACACAAATGTGCTGTATCTGCATGCATATAGACTTCTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

162

Amino Acids

18.32

Weight (kDa)

9.35

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	122
AclWI	GGATC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	206
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	4 cut(s)	13, 234, 313, 340
AluI	AGCT	4 cut(s)	13, 234, 313, 340
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	10, 46
AspS9I	GGNCC	3 cut(s)	62, 120, 218
AsuHPI	GGTGA	3 cut(s)	68, 73, 78
AvaII	GGWCC	3 cut(s)	62, 120, 218
BbsI	GAAGAC	2 cut(s)	326, 334
BbvI	GCAGC	2 cut(s)	22, 58
BccI	CCATC	2 cut(s)	111, 164
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	441
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	2 cut(s)	11, 47
BlsI	GCNGC	2 cut(s)	12, 48
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	3 cut(s)	62, 120, 218
BmgT120I	GGNCC	3 cut(s)	62, 120, 218
BmiI	GGNNCC	2 cut(s)	64, 242
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	326, 334
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	122, 156
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	191, 269
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	22, 58
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	260, 352
BspCNI	CTCAG	2 cut(s)	192, 268
BspEI	TCCGGA	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	64, 242
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	260, 352
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	200, 255
BstF5I	GGATG	2 cut(s)	122, 156
BstKTI	GATC	2 cut(s)	263, 355
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	260, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	22, 58
BstV2I	GAAGAC	2 cut(s)	326, 334
BstX2I	RGATCY	2 cut(s)	260, 352
BstYI	RGATCY	2 cut(s)	260, 352
BtsCI	GGATG	2 cut(s)	122, 156
Cac8I	GCNNGC	1 cut(s)	468
Cfr13I	GGNCC	3 cut(s)	62, 120, 218
CviAII	CATG	1 cut(s)	467
CviJI	RGCY	5 cut(s)	13, 234, 248, 313, 340
CviKI_1	RGCY	5 cut(s)	13, 234, 248, 313, 340
DdeI	CTNAG	2 cut(s)	200, 255
DpnI	GATC	2 cut(s)	262, 354
DpnII	GATC	2 cut(s)	260, 352
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	62, 120, 218
EcoRII	CCWGG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	472
FaeI	CATG	1 cut(s)	470
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	11, 47
FokI	GGATG	2 cut(s)	129, 143
Fsp4HI	GCNGC	2 cut(s)	11, 47
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	11, 47
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	470
HindIII	AAGCTT	2 cut(s)	232, 311
HinfI	GANTC	2 cut(s)	126, 202
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	3 cut(s)	68, 73, 78
Hpy188I	TCNGA	2 cut(s)	258, 397
Hpy188III	TCNNGA	3 cut(s)	123, 228, 347
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	266, 443, 466, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	200, 255
Hsp92II	CATG	1 cut(s)	470
Kpn2I	TCCGGA	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	260, 352
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	105, 136, 174, 193, 220, 234, 241
Lsp1109I	GCAGC	2 cut(s)	22, 58
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	262, 354
MboI	GATC	2 cut(s)	260, 352
MboII	GAAGA	5 cut(s)	162, 331, 335, 339, 347
MflI	RGATCY	2 cut(s)	260, 352
MluCI	AATT	4 cut(s)	36, 100, 267, 282
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	84, 89, 94, 179, 343, 426, 430, 434
Mph1103I	ATGCAT	1 cut(s)	472
MroI	TCCGGA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	2 cut(s)	260, 352
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	2 cut(s)	64, 242
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	470
OliI	CACNNNNGTG	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	12, 48
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	64, 242
PspPI	GGNCC	3 cut(s)	62, 120, 218
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	2 cut(s)	260, 352
RseI	CAYNNNNRTG	1 cut(s)	452
SatI	GCNGC	2 cut(s)	11, 47
Sau3AI	GATC	2 cut(s)	260, 352
Sau96I	GGNCC	3 cut(s)	62, 120, 218
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	9 cut(s)	15, 76, 81, 86, 212, 220, 236, 315, 342
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	62, 120, 218
SmiMI	CAYNNNNRTG	1 cut(s)	452
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	4 cut(s)	36, 100, 267, 282
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	36, 100, 267, 282
TfiI	GAWTC	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	10, 46
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	332, 414
TspGWI	ACGGA	1 cut(s)	392
VpaK11BI	GGWCC	3 cut(s)	62, 120, 218
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.