Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

32204948 .. 32208040

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGGATACCTATGCTGATAGGGGGCGACATGTCTCAGGATCCGAGGTGGAGGCGAGATTGTCTACATCTCACATGTACGGTGGAGATGGTGGTCGCGACGGAGATGGTGGCCGCAAGAGTGGGTTACTAATTGATAATACGGGCTTTGACGTCGTGTCAAAGATGGCAGATGTGGTAGAACTGAATGAGTTCGTGTCAAAGATGGCAAATGCATTAGTATATAAGAAATCTGCATTTGAGGTTATACTTCCAGGAAGTGAAGTTCCAAAGTGGTTCGATTGGCGCAGGGATGAAGTCTATGTTCTTATTCGTGATTACACTATGCATGATATATGTGAACTTTCGATTGAAATCCCAAGGACTCTGAAATGGAAGAAAACAGGGCTTGTTGTTTGTGCTGTTTTTGAAGCTATGCAAGATTATTCTGGTTACTGCGGTTTTGGTCTCCACATTACAGTCAATGATGACATGGATGACTCATTGTTGTGCTCCTTTATAGCAATAGTACAAGAGCCATCAACTCATGTGTGGCTGACATATATTCCATTAAACGTTGACATTAAGAAAGAGGTGGATAGAAAGATTGATCAATCGAGACCTTATTTGTGTCGACTTAACTTTTACCATCTAGACGGTCAAGGGTTTCTCTTTAAAAGTTGCGGTGTCCACCTAGCTAATATGCCCTACGATGATGATGATGCGAGCAGTGAGGACTCGGCAAACAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0033993 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051365 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0080090 GO:0097305 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

245

Amino Acids

27.58

Weight (kDa)

4.99

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
AccI	GTMKAC	2 cut(s)	65, 613
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	115, 438, 663
AclI	AACGTT	1 cut(s)	555
AclWI	GGATC	2 cut(s)	36, 49
AcoI	YGGCCR	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	80, 510
AflIII	ACRYGT	2 cut(s)	31, 75
AgsI	TTSAA	2 cut(s)	353, 410
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	413, 677
AluI	AGCT	2 cut(s)	413, 677
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	3 cut(s)	40, 452, 592
AlwI	GGATC	2 cut(s)	36, 49
AoxI	GGCC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	494
BccI	CCATC	6 cut(s)	83, 101, 160, 199, 526, 636
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	40, 452, 592
BfaI	CTAG	2 cut(s)	632, 674
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	452, 592
BsaJI	CCNNGG	2 cut(s)	45, 359
Bse8I	GATNNNNATC	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	45, 359
BseGI	GGATG	2 cut(s)	298, 481
BseJI	GATNNNNATC	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	494
BsmAI	GTCTC	3 cut(s)	40, 452, 592
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	2 cut(s)	452, 592
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	41, 589
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	3 cut(s)	115, 438, 663
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	36, 49
BspTNI	GGTCTC	2 cut(s)	452, 592
BssECI	CCNNGG	2 cut(s)	45, 359
BssMI	GATC	2 cut(s)	41, 589
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	3 cut(s)	83, 460, 638
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	298, 481
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	44, 592
BstMAI	GTCTC	3 cut(s)	40, 452, 592
BstMBI	GATC	2 cut(s)	41, 589
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	35, 79
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	298, 481
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	1 cut(s)	715
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	79, 509
CviAII	CATG	5 cut(s)	32, 76, 329, 472, 527
CviJI	RGCY	7 cut(s)	114, 147, 388, 413, 517, 535, 677
CviKI_1	RGCY	7 cut(s)	114, 147, 388, 413, 517, 535, 677
CviQI	GTAC	2 cut(s)	79, 509
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	2 cut(s)	43, 591
DpnII	GATC	2 cut(s)	41, 589
DraI	TTTAAA	1 cut(s)	655
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	112
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	359
Eco31I	GGTCTC	2 cut(s)	452, 592
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	2 cut(s)	217, 330
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	5 cut(s)	35, 79, 332, 475, 530
FatI	CATG	5 cut(s)	31, 75, 328, 471, 526
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	2 cut(s)	65, 613
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	2 cut(s)	305, 488
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	2 cut(s)	632, 674
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	35, 79, 332, 475, 530
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	2 cut(s)	559, 614
HindII	GTYRAC	2 cut(s)	559, 614
HinfI	GANTC	3 cut(s)	364, 479, 716
Hpy166II	GTNNAC	5 cut(s)	66, 341, 559, 614, 670
Hpy188I	TCNGA	2 cut(s)	46, 369
Hpy188III	TCNNGA	5 cut(s)	39, 98, 314, 597, 632
Hpy8I	GTNNAC	5 cut(s)	66, 341, 559, 614, 670
Hpy99I	CGWCG	2 cut(s)	104, 158
HpyCH4III	ACNGT	3 cut(s)	83, 460, 638
HpyCH4IV	ACGT	2 cut(s)	153, 555
HpyCH4V	TGCA	4 cut(s)	215, 236, 328, 418
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	2 cut(s)	153, 555
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	35, 79, 332, 475, 530
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	41, 589
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	6 cut(s)	24, 240, 267, 274, 369, 414
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	632, 674
MaeII	ACGT	2 cut(s)	153, 555
MaeIII	GTNAC	2 cut(s)	126, 431
MalI	GATC	2 cut(s)	43, 591
MboI	GATC	2 cut(s)	41, 589
MboII	GAAGA	1 cut(s)	388
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	358, 473, 710
MnlI	CCTC	5 cut(s)	40, 46, 235, 565, 706
Mph1103I	ATGCAT	2 cut(s)	217, 330
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	4 cut(s)	551, 564, 618, 654
MslI	CAYNNNNRTG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	99
NdeII	GATC	2 cut(s)	41, 589
NlaIII	CATG	5 cut(s)	35, 79, 332, 475, 530
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	698
NruI	TCGCGA	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	217, 330
NspI	RCATGY	2 cut(s)	35, 79
PciI	ACATGT	2 cut(s)	31, 75
PdmI	GAANNNNTTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	3 cut(s)	358, 473, 710
PpsI	GAGTC	3 cut(s)	358, 473, 710
PscI	ACATGT	2 cut(s)	31, 75
Psp1406I	AACGTT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	2 cut(s)	80, 510
RsaNI	GTAC	2 cut(s)	79, 509
RseI	CAYNNNNRTG	1 cut(s)	487
SalI	GTCGAC	1 cut(s)	612
SaqAI	TTAA	4 cut(s)	551, 564, 618, 654
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	2 cut(s)	41, 589
SchI	GAGTC	3 cut(s)	358, 473, 710
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	115, 438, 663
SspMI	CTAG	2 cut(s)	632, 674
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	83, 460, 638
TaiI	ACGT	2 cut(s)	156, 558
TaqI	TCGA	4 cut(s)	279, 347, 596, 613
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	4 cut(s)	551, 564, 618, 654
Tru9I	TTAA	4 cut(s)	551, 564, 618, 654
TscAI	CASTG	1 cut(s)	715
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	715
XbaI	TCTAGA	1 cut(s)	631
XceI	RCATGY	2 cut(s)	35, 79
XmiI	GTMKAC	2 cut(s)	65, 613
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	632, 674
ZraI	GACGTC	1 cut(s)	154
Zsp2I	ATGCAT	2 cut(s)	217, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.