Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Reverse (-)

78134507 .. 78142664

Gene Structure 8158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG551000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACGGCAATTTGTAGGCAGCAATGGACACTTGGACCCCGAAAACCTCACCTCACCTCACCACCAGAGAGCAATTTCGTCTATACGGGATGGTCCGGAATCTCCAAAATCTCCAATAGCAAAGTCTCCATCCCAGAACTCTCTTCGTTGCCAAAAGGAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGTACTACGCGGAGAGGAATACCAGTTTGAAGAATTTGTGCAGGTGGATTCCCAACTTCGCTCCCCAGAAGCAGGAGGTCCAAAACATCACAGCGCACTCCCACTGGTACTGCATTGCTCAGACTTTGTTTGGTTTGCAATAGCGATCCTAAGCTTGATGTCAACTATTCTGCCTTGGAAAACTGAAGTTATCTCGAAGAAAGTAGTCATTGCACTTGGCAAGAGTGTAGCTGGAAGTATCAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.96

Weight (kDa)

9.07

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	192, 297
AfiI	CCNNNNNNNGG	2 cut(s)	158, 260
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	342, 419
AluI	AGCT	2 cut(s)	342, 419
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	35, 93, 266
AsuHPI	GGTGA	3 cut(s)	41, 46, 51
AvaII	GGWCC	3 cut(s)	35, 93, 266
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	2 cut(s)	84, 137
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmcAI	AGTACT	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	3 cut(s)	35, 93, 266
BmgT120I	GGNCC	3 cut(s)	35, 93, 266
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	179, 362
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 260
Bse1I	ACTGG	2 cut(s)	211, 297
Bse3DI	GCAATG	3 cut(s)	29, 301, 396
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	179, 362
BseGI	GGATG	2 cut(s)	95, 129
BseLI	CCNNNNNNNGG	2 cut(s)	158, 260
BseMI	GCAATG	3 cut(s)	29, 301, 396
BseMII	CTCAG	2 cut(s)	164, 321
BseNI	ACTGG	2 cut(s)	211, 297
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	158, 260
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	165, 320
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	328
BsrDI	GCAATG	3 cut(s)	29, 301, 396
BsrI	ACTGG	2 cut(s)	211, 297
BssECI	CCNNGG	2 cut(s)	179, 362
BssMI	GATC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	148
BstDEI	CTNAG	3 cut(s)	173, 307, 338
BstF5I	GGATG	2 cut(s)	95, 129
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	333
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	95, 129
BtsIMutI	CAGTG	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	3 cut(s)	35, 93, 266
Csp6I	GTAC	2 cut(s)	191, 296
CviJI	RGCY	2 cut(s)	342, 419
CviKI_1	RGCY	2 cut(s)	342, 419
CviQI	GTAC	2 cut(s)	191, 296
DdeI	CTNAG	3 cut(s)	173, 307, 338
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	362
Eco47I	GGWCC	3 cut(s)	35, 93, 266
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	362
FaiI	YATR	1 cut(s)	84
FaqI	GGGAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	102, 116
Fsp4HI	GCNGC	1 cut(s)	20
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	99, 175, 236
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	41, 46, 51
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	96, 382
Hpy8I	GTNNAC	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	229, 301, 326, 401
HpyF3I	CTNAG	3 cut(s)	173, 307, 338
HspAI	GCGC	1 cut(s)	282
Kpn2I	TCCGGA	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	31
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	3 cut(s)	135, 230, 397
MluCI	AATT	3 cut(s)	9, 73, 221
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	57, 62, 67, 152, 196, 257
MroI	TCCGGA	1 cut(s)	95
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	198
NdeII	GATC	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	99, 236
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	35, 93, 266
RsaI	GTAC	2 cut(s)	192, 297
RsaNI	GTAC	2 cut(s)	191, 296
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	3 cut(s)	35, 93, 266
ScaI	AGTACT	1 cut(s)	192
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	8 cut(s)	49, 54, 59, 185, 234, 268, 344, 421
SinI	GGWCC	3 cut(s)	35, 93, 266
Sse9I	AATT	3 cut(s)	9, 73, 221
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	362
TaqI	TCGA	1 cut(s)	383
TasI	AATT	3 cut(s)	9, 73, 221
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	99, 236
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	19
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	3 cut(s)	35, 93, 266
XapI	RAATTY	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.