Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0002283

Physical Location & Seq

Genomic Coordinates Forward (+)

30785 .. 34451

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgcccggagggggggggtgtcgctgcgtctttggcgcggcactgtgctggacttcgggcagcaatggacacttggaccccgaaaacctcacctcacctcaccaccagagagcaatttcgtctatacgggatggtccggaatctccaaaatctctaatagcaaagtctccatcccagaactctcttcgtactgctactctcgttgccaaaaggaaaatgtttgctgagtcccaggttggaaggtccagtttccagcagcttttggagccaaagcccactcagagatctgcaattactccttatagaattgttcttggtaatataaaaagagacaagcaatcatgtggatttgggatcctagctgatggtcgacttgctgatttgatccgaagagttgctacctttgggatgaagaagttgctaccccaggctgagcttggcttcctcaacataggaagccgcccctcaagaagaaagagctctgctagaattggacatcttcgggcaattccatgggtgtttgcgtggaatcaaaccagatttgtcttccagcttggcttggagttaaaccccttgttgatctttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

196

Amino Acids

21.56

Weight (kDa)

11.07

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002283)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314571 RchiOBHm_Chr1g0333411 RchiOBHm_Chr1g0341171 RchiOBHm_Chr1g0355601 RchiOBHm_Chr1g0362661 RchiOBHm_Chr2g0135871 RchiOBHm_Chr2g0155311 RchiOBHm_Chr4g0426971 RchiOBHm_Chr4g0434611 RchiOBHm_Chr5g0016171 RchiOBHm_Chr5g0016231 RchiOBHm_Chr6g0248021 RchiOBHm_Chr6g0302761
rosa_laevigata	RLG00000002685 RLG00000008332 RLG00000009004 RLG00000018585 RLG00000023270 RLG00000025198
rosa_multiflora	Rmu_sc0001376.1_g000006 Rmu_sc0002968.1_g000005
rosa_roxburghii	Rroxscaffold_3G00219200
rosa_rugosa	Rorug01G0313400 Rorug05G0478600
rosa_samantha	Rh1CG246800 Rh2AG443800 Rh2AG514200 Rh2AG551000 Rh2BG052200 Rh2CG430800 Rh2CG499100 Rh4AG183700 Rh4CG195700 Rh4DG179000 Rh5CG135500 Rh5CG135700 Rh5DG275400 Rh5DG564200 Rh6BG040300 Rh7DG279100
rosa_wichuraiana	Rw2G011220 Rw4G022300 Rw7G012030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	38, 460
AclWI	GGATC	3 cut(s)	349, 362, 379
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	11, 12
AjnI	CCWGG	2 cut(s)	231, 426
AluBI	AGCT	5 cut(s)	259, 362, 436, 480, 553
AluI	AGCT	5 cut(s)	259, 362, 436, 480, 553
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	171, 324
AlwI	GGATC	3 cut(s)	349, 362, 379
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	24, 60, 256
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	76, 134, 243
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	82, 87, 92
AvaII	GGWCC	3 cut(s)	76, 134, 243
BamHI	GGATCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	11, 72, 268
BccI	CCATC	3 cut(s)	125, 178, 359
BciT130I	CCWGG	2 cut(s)	233, 428
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	171, 324
BfaI	CTAG	2 cut(s)	359, 486
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	5 cut(s)	25, 39, 61, 257, 460
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	5 cut(s)	26, 40, 62, 258, 461
Bme1390I	CCNGG	3 cut(s)	6, 233, 428
Bme18I	GGWCC	3 cut(s)	76, 134, 243
BmgT120I	GGNCC	3 cut(s)	76, 134, 243
BmiI	GGNNCC	3 cut(s)	78, 267, 356
BmrFI	CCNGG	3 cut(s)	6, 233, 428
BpiI	GAAGAC	1 cut(s)	538
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	231, 426, 512
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 12
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	233, 428
BseDI	CCNNGG	3 cut(s)	231, 426, 512
BseGI	GGATG	3 cut(s)	136, 170, 414
BseLI	CCNNNNNNNGG	2 cut(s)	11, 12
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	3 cut(s)	216, 293, 423
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	11, 72, 268
Bsh1236I	CGCG	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	6, 137
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	11, 12
BsmAI	GTCTC	2 cut(s)	171, 324
BsmFI	GGGAC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	284, 354, 384, 579
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	2 cut(s)	38, 460
BspCNI	CTCAG	3 cut(s)	217, 292, 424
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	3 cut(s)	78, 267, 356
BspPI	GGATC	3 cut(s)	349, 362, 379
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	231, 426, 512
BssMI	GATC	4 cut(s)	284, 354, 384, 579
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	233, 428
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	2 cut(s)	189, 385
BstDEI	CTNAG	3 cut(s)	225, 279, 432
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	136, 170, 414
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	4 cut(s)	287, 357, 387, 582
BstMAI	GTCTC	2 cut(s)	171, 324
BstMBI	GATC	4 cut(s)	284, 354, 384, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 265
BstNI	CCWGG	2 cut(s)	233, 428
BstSCI	CCNGG	3 cut(s)	4, 231, 426
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	11, 72, 268
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	284, 354
BstYI	RGATCY	2 cut(s)	284, 354
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	136, 170, 414
BtsIMutI	CAGTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	76, 134, 243
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	2 cut(s)	342, 513
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	225, 279, 432
DpnI	GATC	4 cut(s)	286, 356, 386, 581
DpnII	GATC	4 cut(s)	284, 354, 384, 579
Eam1104I	CTCTTC	2 cut(s)	189, 385
EarI	CTCTTC	2 cut(s)	189, 385
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	3 cut(s)	76, 134, 243
Eco53kI	GAGCTC	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	231, 426
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	2 cut(s)	345, 516
FaiI	YATR	6 cut(s)	125, 303, 323, 343, 452, 514
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	341, 512
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	25, 39, 61, 257, 460
FokI	GGATG	3 cut(s)	143, 157, 421
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	5 cut(s)	25, 39, 61, 257, 460
FspBI	CTAG	2 cut(s)	359, 486
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	5 cut(s)	25, 39, 61, 257, 460
HapII	CCGG	2 cut(s)	6, 137
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	345, 516
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	371
HindII	GTYRAC	1 cut(s)	371
HinfI	GANTC	3 cut(s)	140, 227, 529
HpaII	CCGG	2 cut(s)	6, 137
HphI	GGTGA	3 cut(s)	82, 87, 92
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	282, 389
Hpy188III	TCNNGA	2 cut(s)	137, 468
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 265
HpyF3I	CTNAG	3 cut(s)	225, 279, 432
Hsp92II	CATG	2 cut(s)	345, 516
HspAI	GCGC	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	284, 354, 384, 579
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	11, 72, 268
MaeI	CTAG	2 cut(s)	359, 486
MalI	GATC	4 cut(s)	286, 356, 386, 581
MboI	GATC	4 cut(s)	284, 354, 384, 579
MboII	GAAGA	6 cut(s)	176, 402, 424, 483, 491, 538
MflI	RGATCY	2 cut(s)	284, 354
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	5 cut(s)	114, 291, 306, 489, 507
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	98, 103, 108, 455, 475
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	1 cut(s)	566
MspI	CCGG	2 cut(s)	6, 137
MspR9I	CCNGG	3 cut(s)	6, 233, 428
MvaI	CCWGG	2 cut(s)	233, 428
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	33, 265
NciI	CCSGG	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	4 cut(s)	284, 354, 384, 579
NlaIII	CATG	2 cut(s)	345, 516
NlaIV	GGNNCC	3 cut(s)	78, 267, 356
PfeI	GAWTC	2 cut(s)	140, 529
PkrI	GCNGC	5 cut(s)	26, 40, 62, 258, 461
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	231, 426
PspGI	CCWGG	2 cut(s)	231, 426
PspN4I	GGNNCC	3 cut(s)	78, 267, 356
PspPI	GGNCC	3 cut(s)	76, 134, 243
PsuI	RGATCY	2 cut(s)	284, 354
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	5 cut(s)	25, 39, 61, 257, 460
Sau3AI	GATC	4 cut(s)	284, 354, 384, 579
Sau96I	GGNCC	3 cut(s)	76, 134, 243
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	6, 233, 428
SduI	GDGCHC	1 cut(s)	482
SinI	GGWCC	3 cut(s)	76, 134, 243
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	114, 291, 306, 489, 507
SsiI	CCGC	2 cut(s)	38, 460
SspMI	CTAG	2 cut(s)	359, 486
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	4, 231, 426
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	370
TasI	AATT	5 cut(s)	114, 291, 306, 489, 507
TauI	GCSGC	2 cut(s)	41, 462
TfiI	GAWTC	2 cut(s)	140, 529
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	3 cut(s)	24, 60, 256
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	3 cut(s)	76, 134, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	2 cut(s)	359, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.