Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

1405716 .. 1408336

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCTGATGGTTGCAGCTGTGACTGAGAAGCAAGATTTGAGTGTTCCTTTGCTTAAGGATGAGTCCATGCTTGTTGAGAGTAAGAAACTATTTGTGCCCGGTGCTGTAGACTTGACTAAGGTCATGCATTCCAAGGTTAATGGTTCATATCATGAATCTGATTCGAGCTATCAACCTTCCTCTCCCACATCTGATGAGATAGAGACACCAAAGGGTCGAGAATTGGCTTTGGATGGGCTTTGGGATGCTAGTGGTGGATTGAACACCAAGAAGACTAAATTCAAGAGTTTCTACCTTGGAGACTTTGATCTGATTCATGATGAAGACCACATGCTTGAAGATCATGAGCAAAGTGCAATTGTGACTCAGTTTACCCAATTGTGCCAACAAGCTGGCATTAAGGTACGCATGGTTACCGGAGACTTGCTTATGCTGGCTCATCCTCTACATTTCAAGCTTATTAATAGTGACAATTCTAATGTTACTGTTTTGGAGAATATCAAGTACAAACACTGTAATTGTGATATTGTTGGTGTTGTGGAGGATTTCATAATTTCAAAAAAGATAGGAGGAGTTTTACGAAAGGGCATATGTGGGCTATATATGTTGATGATGGAATGCCGAGAAATTATGGTTTGGTGGTTGGATCTTCAGAATAATGGGAATCAGTGGTTGGCTTCTTGGGAGAAGTTGGGCTTGCATGTTCCTTGTGGAAGGATTAAAGTTACTAAGCAAACCACCTCTAATTCAGTCCATATAATTTTTCATGTGATGGAATGTGATAGAACTGCAAGAGAGATTTATCTGATTTATCCAAAGAAGGGATTTGTTTGGGCACTTTGTCCCTCTCACACCATCAACAAATTTTTATTCCTAAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

294

Amino Acids

33.34

Weight (kDa)

6.45

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	209 - 280	4.2e-12	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	654
AcsI	RAATTY	2 cut(s)	278, 863
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	405, 506
AfiI	CCNNNNNNNGG	1 cut(s)	821
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	262, 283, 338, 454, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AluBI	AGCT	4 cut(s)	17, 168, 392, 457
AluI	AGCT	4 cut(s)	17, 168, 392, 457
Alw26I	GTCTC	3 cut(s)	197, 294, 414
AlwI	GGATC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	278, 863
AseI	ATTAAT	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	99
BaeGI	GKGCMC	2 cut(s)	99, 838
BbsI	GAAGAC	2 cut(s)	278, 330
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	4 cut(s)	227, 607, 766, 863
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	197, 294, 414
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	278, 330
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	132, 295
BsaWI	WCCGGW	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
BseDI	CCNNGG	2 cut(s)	132, 295
BseGI	GGATG	4 cut(s)	64, 238, 250, 439
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	2 cut(s)	15, 380
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	2 cut(s)	99, 838
BseXI	GCAGC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	99, 417
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	3 cut(s)	197, 294, 414
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	2 cut(s)	127, 623
Bsp1286I	GDGCHC	2 cut(s)	99, 838
Bsp143I	GATC	3 cut(s)	307, 340, 646
BspCNI	CTCAG	2 cut(s)	16, 379
BspHI	TCATGA	3 cut(s)	151, 316, 343
BspPI	GGATC	1 cut(s)	654
BspTI	CTTAAG	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	132, 295
BssMI	GATC	3 cut(s)	307, 340, 646
BssT1I	CCWWGG	2 cut(s)	132, 295
Bst4CI	ACNGT	2 cut(s)	487, 515
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	394, 435, 698
BstDEI	CTNAG	4 cut(s)	24, 117, 366, 729
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	4 cut(s)	64, 238, 250, 439
BstKTI	GATC	3 cut(s)	310, 343, 649
BstMAI	GTCTC	3 cut(s)	197, 294, 414
BstMBI	GATC	3 cut(s)	307, 340, 646
BstNSI	RCATGY	2 cut(s)	334, 704
BstPAI	GACNNNNGTC	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	2 cut(s)	99, 838
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	278, 330
BstX2I	RGATCY	1 cut(s)	646
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	64, 238, 250, 439
BtsIMutI	CAGTG	2 cut(s)	511, 674
Cac8I	GCNNGC	3 cut(s)	394, 435, 698
CciI	TCATGA	3 cut(s)	151, 316, 343
Csp6I	GTAC	2 cut(s)	404, 505
CviAII	CATG	9 cut(s)	67, 124, 152, 317, 331, 344, 409, 701, 767
CviQI	GTAC	2 cut(s)	404, 505
DdeI	CTNAG	4 cut(s)	24, 117, 366, 729
DpnI	GATC	3 cut(s)	309, 342, 648
DpnII	GATC	3 cut(s)	307, 340, 646
Eco130I	CCWWGG	2 cut(s)	132, 295
Eco57I	CTGAAG	1 cut(s)	635
Eco91I	GGTNACC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	132, 295
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	132, 295
FaeI	CATG	9 cut(s)	70, 127, 155, 320, 334, 347, 412, 704, 770
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	9 cut(s)	66, 123, 151, 316, 330, 343, 408, 700, 766
FauNDI	CATATG	1 cut(s)	590
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	4 cut(s)	71, 245, 257, 426
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	15
HapII	CCGG	2 cut(s)	99, 417
Hin1II	CATG	9 cut(s)	70, 127, 155, 320, 334, 347, 412, 704, 770
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	6 cut(s)	62, 155, 161, 313, 364, 664
HpaII	CCGG	2 cut(s)	99, 417
Hpy166II	GTNNAC	2 cut(s)	109, 372
Hpy188I	TCNGA	5 cut(s)	160, 193, 312, 654, 807
Hpy188III	TCNNGA	5 cut(s)	152, 218, 283, 317, 344
Hpy8I	GTNNAC	2 cut(s)	109, 372
HpyAV	CCTTC	3 cut(s)	186, 708, 814
HpyCH4III	ACNGT	2 cut(s)	487, 515
HpyCH4V	TGCA	5 cut(s)	14, 127, 356, 700, 791
HpyF3I	CTNAG	4 cut(s)	24, 117, 366, 729
Hsp92II	CATG	9 cut(s)	70, 127, 155, 320, 334, 347, 412, 704, 770
Kzo9I	GATC	3 cut(s)	307, 340, 646
LpnPI	CCDG	4 cut(s)	112, 378, 419, 430
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	6 cut(s)	19, 361, 412, 467, 481, 724
MalI	GATC	3 cut(s)	309, 342, 648
MboI	GATC	3 cut(s)	307, 340, 646
MboII	GAAGA	4 cut(s)	283, 335, 350, 641
MfeI	CAATTG	2 cut(s)	357, 377
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	99, 838
MlyI	GAGTC	2 cut(s)	71, 358
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	6 cut(s)	190, 453, 535, 563, 751, 856
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	5 cut(s)	54, 138, 399, 462, 720
MspA1I	CMGCKG	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	2 cut(s)	99, 417
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	2 cut(s)	357, 377
Mva1269I	GAATGC	2 cut(s)	127, 623
NciI	CCSGG	1 cut(s)	99
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	3 cut(s)	307, 340, 646
NlaIII	CATG	9 cut(s)	70, 127, 155, 320, 334, 347, 412, 704, 770
NmeAIII	GCCGAG	1 cut(s)	647
NmuCI	GTSAC	3 cut(s)	19, 361, 467
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	2 cut(s)	334, 704
PagI	TCATGA	3 cut(s)	151, 316, 343
PctI	GAATGC	2 cut(s)	127, 623
PfeI	GAWTC	4 cut(s)	155, 161, 313, 664
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	70, 358
PpsI	GAGTC	2 cut(s)	70, 358
PshAI	GACNNNNGTC	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	462
PspEI	GGTNACC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	405, 506
RsaNI	GTAC	2 cut(s)	404, 505
SaqAI	TTAA	5 cut(s)	54, 138, 399, 462, 720
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	307, 340, 646
SchI	GAGTC	2 cut(s)	71, 358
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	99, 838
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	2 cut(s)	132, 295
TaaI	ACNGT	2 cut(s)	487, 515
TaqI	TCGA	2 cut(s)	164, 217
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	4 cut(s)	155, 161, 313, 664
Tru1I	TTAA	5 cut(s)	54, 138, 399, 462, 720
Tru9I	TTAA	5 cut(s)	54, 138, 399, 462, 720
TscAI	CASTG	2 cut(s)	518, 674
TseFI	GTSAC	3 cut(s)	19, 361, 467
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	19, 361, 467
TspDTI	ATGAA	6 cut(s)	135, 168, 305, 336, 538, 755
TspRI	CASTG	2 cut(s)	518, 674
Vha464I	CTTAAG	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	278, 863
XceI	RCATGY	2 cut(s)	334, 704
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.